CNIH4 (cornichon family member 4) - Rat Genome Database

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Gene: CNIH4 (cornichon family member 4) Pan paniscus
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Symbol: CNIH4
Name: cornichon family member 4 (Ensembl:cornichon family AMPA receptor auxiliary protein 4)
RGD ID: 11771650
Description: ENCODES a protein that exhibits CCR5 chemokine receptor binding (inferred); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); vesicle-mediated transport (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cornichon family AMPA receptor auxiliary protein 4; cornichon homolog 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2125,150,396 - 25,170,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1125,101,321 - 25,121,637 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01199,825,889 - 199,848,664 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11204,834,031 - 204,853,888 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1204,834,031 - 204,855,747 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CNIH4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2125,150,396 - 25,170,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1125,101,321 - 25,121,637 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01199,825,889 - 199,848,664 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11204,834,031 - 204,853,888 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1204,834,031 - 204,855,747 (+)Ensemblpanpan1.1panPan2
CNIH4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,356,803 - 224,379,452 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,356,858 - 224,379,459 (+)EnsemblGRCh38hg38GRCh38
GRCh371224,544,581 - 224,567,154 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361222,611,218 - 222,630,318 (+)NCBINCBI36Build 36hg18NCBI36
Celera1197,735,537 - 197,754,630 (+)NCBICelera
Cytogenetic Map1q42.11NCBI
HuRef1195,064,711 - 195,087,194 (+)NCBIHuRef
CHM1_11225,817,049 - 225,839,535 (+)NCBICHM1_1
T2T-CHM13v2.01223,545,746 - 223,568,267 (+)NCBIT2T-CHM13v2.0
Cnih4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,977,437 - 180,996,559 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,972,258 - 180,996,559 (+)EnsemblGRCm39 Ensembl
GRCm381181,150,366 - 181,168,994 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1181,144,693 - 181,168,994 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,081,062 - 183,099,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,987,662 - 183,003,101 (+)NCBIMGSCv36mm8
Celera1188,217,931 - 188,235,901 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.53NCBI
Cnih4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,442,054 - 95,458,163 (+)NCBIGRCr8
mRatBN7.21392,910,315 - 92,926,428 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,910,315 - 92,927,853 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,415,636 - 95,431,748 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,815,538 - 96,831,650 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,991,175 - 94,007,276 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,469,382 - 99,490,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,473,044 - 99,489,263 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,468,780 - 104,484,267 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,921,481 - 96,940,409 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1392,451,600 - 92,467,776 (+)NCBICelera
Cytogenetic Map13q26NCBI
Cnih4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955520991,417 - 1,007,107 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955520991,477 - 1,006,731 (-)NCBIChiLan1.0ChiLan1.0
CNIH4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1740,010,412 - 40,022,425 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl740,010,425 - 40,022,347 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha739,492,398 - 39,508,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0739,844,709 - 39,860,649 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl739,844,576 - 39,860,616 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1739,685,664 - 39,701,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0739,693,120 - 39,708,864 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0739,961,956 - 39,977,882 (-)NCBIUU_Cfam_GSD_1.0
Cnih4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934453,329,004 - 53,344,647 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365261,402,593 - 1,419,315 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365261,402,593 - 1,418,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNIH4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,688,817 - 12,713,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11012,688,833 - 12,705,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,124,470 - 15,128,426 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNIH4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,402,570 - 5,424,008 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,402,151 - 5,423,757 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660555,580,601 - 5,600,358 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnih4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248355,977,977 - 5,993,317 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248355,977,921 - 5,995,209 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000051293   ⟹   ENSPPAP00000028446
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1204,834,031 - 204,853,888 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000051294   ⟹   ENSPPAP00000028447
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1204,834,031 - 204,853,888 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000051298   ⟹   ENSPPAP00000028451
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1204,834,144 - 204,855,747 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000051300   ⟹   ENSPPAP00000028453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1204,834,144 - 204,855,747 (+)Ensembl
RefSeq Acc Id: XM_003814904   ⟹   XP_003814952
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2125,150,396 - 25,170,703 (-)NCBI
NHGRI_mPanPan1125,101,321 - 25,121,637 (-)NCBI
Mhudiblu_PPA_v01199,825,889 - 199,845,960 (+)NCBI
PanPan1.11204,834,031 - 204,853,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008967776   ⟹   XP_008966024
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2125,150,396 - 25,170,457 (-)NCBI
NHGRI_mPanPan1125,101,321 - 25,121,391 (-)NCBI
Mhudiblu_PPA_v01199,825,889 - 199,845,960 (+)NCBI
PanPan1.11204,834,031 - 204,853,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008967777   ⟹   XP_008966025
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2125,155,880 - 25,170,457 (-)NCBI
NHGRI_mPanPan1125,106,802 - 25,121,391 (-)NCBI
Mhudiblu_PPA_v01199,825,889 - 199,840,478 (+)NCBI
PanPan1.11204,834,096 - 204,848,418 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003814952   ⟸   XM_003814904
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BP86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008966024   ⟸   XM_008967776
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BJG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008966025   ⟸   XM_008967777
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSPPAP00000028447   ⟸   ENSPPAT00000051294
RefSeq Acc Id: ENSPPAP00000028446   ⟸   ENSPPAT00000051293
RefSeq Acc Id: ENSPPAP00000028451   ⟸   ENSPPAT00000051298
RefSeq Acc Id: ENSPPAP00000028453   ⟸   ENSPPAT00000051300


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051293.1 UniProtKB/TrEMBL
  ENSPPAT00000051294.1 UniProtKB/TrEMBL
  ENSPPAT00000051298.1 UniProtKB/TrEMBL
  ENSPPAT00000051300.1 UniProtKB/TrEMBL
InterPro Cornichon UniProtKB/TrEMBL
NCBI Gene CNIH4 ENTREZGENE
PANTHER CORNICHON-RELATED UniProtKB/TrEMBL
  PROTEIN CORNICHON HOMOLOG 4 UniProtKB/TrEMBL
Pfam Cornichon UniProtKB/TrEMBL
SMART Cornichon UniProtKB/TrEMBL
UniProt A0A2R9BGP6_PANPA UniProtKB/TrEMBL
  A0A2R9BJG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BP86 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BP90_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-06 CNIH4  cornichon family member 4  CNIH4  cornichon family AMPA receptor auxiliary protein 4  Symbol and/or name change 5135510 APPROVED