GRIK4 (glutamate ionotropic receptor kainate type subunit 4) - Rat Genome Database

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Gene: GRIK4 (glutamate ionotropic receptor kainate type subunit 4) Pan paniscus
Analyze
Symbol: GRIK4
Name: glutamate ionotropic receptor kainate type subunit 4
RGD ID: 11769787
Description: ENCODES a protein that exhibits kainate selective glutamate receptor activity (inferred); ligand-gated monoatomic ion channel activity (inferred); ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (inferred); INVOLVED IN glutamate receptor signaling pathway (inferred); modulation of chemical synaptic transmission (inferred); monoatomic ion transmembrane transport (inferred); ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamate receptor ionotropic, kainate 4; LOC103786328; uncharacterized LOC103786328; uncharacterized protein LOC103786328
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29121,216,115 - 121,693,585 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111122,319,363 - 122,796,369 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011115,348,836 - 115,827,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111119,415,857 - 119,726,563 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11119,564,412 - 119,750,000 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GRIK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29121,216,115 - 121,693,585 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111122,319,363 - 122,796,369 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011115,348,836 - 115,827,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111119,415,857 - 119,726,563 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11119,564,412 - 119,750,000 (+)Ensemblpanpan1.1panPan2
GRIK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811120,511,748 - 120,988,906 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11120,511,746 - 120,988,906 (+)EnsemblGRCh38hg38GRCh38
GRCh3711120,382,457 - 120,859,615 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611120,036,238 - 120,362,179 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411120,036,237 - 120,362,179NCBI
Celera11117,690,453 - 118,016,395 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11116,471,471 - 116,686,109 (+)NCBIHuRef
HuRef11116,709,134 - 116,796,826 (+)NCBIHuRef
CHM1_111120,418,299 - 120,744,397 (+)NCBICHM1_1
T2T-CHM13v2.011120,535,497 - 121,012,594 (+)NCBIT2T-CHM13v2.0
Grik4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,431,708 - 42,856,296 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,429,431 - 42,855,789 (-)EnsemblGRCm39 Ensembl
GRCm38942,518,182 - 42,945,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,518,135 - 42,944,493 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,328,519 - 42,752,454 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,271,429 - 42,695,366 (-)NCBIMGSCv36mm8
Celera939,769,322 - 40,069,762 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map923.8NCBI
Grik4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8851,802,045 - 52,228,751 (-)NCBIGRCr8
mRatBN7.2842,903,043 - 43,331,990 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl842,905,056 - 43,193,751 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,399,407 - 48,703,806 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0846,678,080 - 46,982,490 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0844,545,682 - 44,850,105 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0846,804,134 - 47,237,546 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl846,806,147 - 47,094,352 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,279,673 - 45,708,193 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4845,510,258 - 45,681,279 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1845,519,023 - 45,690,019 (-)NCBI
Celera842,498,513 - 42,796,671 (-)NCBICelera
Cytogenetic Map8q22NCBI
Grik4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541221,563,595 - 21,934,427 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541221,563,879 - 21,932,292 (+)NCBIChiLan1.0ChiLan1.0
GRIK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1513,075,323 - 13,453,458 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl513,073,968 - 13,370,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha513,130,110 - 13,552,989 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0513,020,970 - 13,444,218 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl513,019,606 - 13,314,772 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1513,141,155 - 13,563,981 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0513,063,169 - 13,485,982 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0513,101,941 - 13,524,911 (-)NCBIUU_Cfam_GSD_1.0
Grik4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947102,480,625 - 102,844,802 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365425,599,785 - 5,763,616 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365425,600,517 - 5,764,042 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl947,639,988 - 48,097,870 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1947,639,987 - 48,095,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2953,199,184 - 53,306,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,067,251 - 112,425,025 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,230,644 - 112,425,014 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604313,657,400 - 14,146,869 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grik4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248804,250,763 - 4,580,177 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248804,250,322 - 4,583,742 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000036235   ⟹   ENSPPAP00000013562
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11119,564,412 - 119,750,000 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000036241   ⟹   ENSPPAP00000013568
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11119,564,412 - 119,750,000 (+)Ensembl
RefSeq Acc Id: XM_057299271   ⟹   XP_057155254
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29121,216,120 - 121,693,585 (+)NCBI
NHGRI_mPanPan111122,319,363 - 122,796,369 (+)NCBI
RefSeq Acc Id: XM_057299272   ⟹   XP_057155255
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29121,216,118 - 121,692,892 (+)NCBI
NHGRI_mPanPan111122,319,363 - 122,795,978 (+)NCBI
RefSeq Acc Id: XM_057299273   ⟹   XP_057155256
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29121,216,120 - 121,692,891 (+)NCBI
NHGRI_mPanPan111122,319,363 - 122,795,978 (+)NCBI
RefSeq Acc Id: XM_057299274   ⟹   XP_057155257
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29121,216,115 - 121,692,892 (+)NCBI
NHGRI_mPanPan111122,319,363 - 122,795,979 (+)NCBI
RefSeq Acc Id: XM_063608842   ⟹   XP_063464912
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29121,216,118 - 121,692,892 (+)NCBI
RefSeq Acc Id: XM_063608843   ⟹   XP_063464913
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29121,521,088 - 121,692,891 (+)NCBI
RefSeq Acc Id: ENSPPAP00000013568   ⟸   ENSPPAT00000036241
RefSeq Acc Id: ENSPPAP00000013562   ⟸   ENSPPAT00000036235
RefSeq Acc Id: XP_057155254   ⟸   XM_057299271
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ADN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155257   ⟸   XM_057299274
- Peptide Label: isoform X5
- UniProtKB: A0A2R9ADN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155255   ⟸   XM_057299272
- Peptide Label: isoform X2
- UniProtKB: A0A2R9ADN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155256   ⟸   XM_057299273
- Peptide Label: isoform X4
- UniProtKB: A0A2R9ADN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063464912   ⟸   XM_063608842
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063464913   ⟸   XM_063608843
- Peptide Label: isoform X6

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029922 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036235.1 UniProtKB/TrEMBL
  ENSPPAT00000036241.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
NCBI Gene GRIK4 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR IONOTROPIC, KAINATE 4 UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/TrEMBL
  Lig_chan UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/TrEMBL
PRINTS NMDARECEPTOR UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/TrEMBL
  PBPe UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/TrEMBL
  SSF53822 UniProtKB/TrEMBL
UniProt A0A2R9ADI9_PANPA UniProtKB/TrEMBL
  A0A2R9ADN4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 GRIK4  glutamate ionotropic receptor kainate type subunit 4  LOC103786328  uncharacterized LOC103786328  Data merged from RGD:11937162 737654 PROVISIONAL