CASD1 (CAS1 domain containing 1) - Rat Genome Database

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Gene: CASD1 (CAS1 domain containing 1) Pan paniscus
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Symbol: CASD1
Name: CAS1 domain containing 1
RGD ID: 11769581
Description: ENCODES a protein that exhibits N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN carbohydrate metabolic process (inferred); xylan acetylation (inferred); xylan biosynthetic process (inferred); ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog); genetic disease (ortholog); movement disease (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CAS1 domain-containing protein 1; N-acetylneuraminate 9-O-acetyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26112,347,178 - 112,425,497 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,611,827 - 160,690,136 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0786,459,449 - 86,520,559 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17100,057,472 - 100,096,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7100,053,248 - 100,096,887 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CASD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26112,347,178 - 112,425,497 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,611,827 - 160,690,136 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0786,459,449 - 86,520,559 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17100,057,472 - 100,096,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7100,053,248 - 100,096,887 (+)Ensemblpanpan1.1panPan2
CASD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38794,509,809 - 94,634,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl794,509,219 - 94,557,019 (+)EnsemblGRCh38hg38GRCh38
GRCh37794,139,121 - 94,186,331 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36793,977,120 - 94,024,216 (+)NCBINCBI36Build 36hg18NCBI36
Celera788,837,411 - 88,884,573 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,746,553 - 88,793,707 (+)NCBIHuRef
CHM1_1794,069,254 - 94,116,405 (+)NCBICHM1_1
T2T-CHM13v2.0795,745,768 - 95,875,261 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2793,468,325 - 93,515,486 (+)NCBI
Casd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,600,911 - 4,643,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,600,839 - 4,643,355 (+)EnsemblGRCm39 Ensembl
GRCm3864,600,911 - 4,643,355 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,600,839 - 4,643,355 (+)EnsemblGRCm38mm10GRCm38
MGSCv3764,551,066 - 4,593,381 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,551,066 - 4,593,381 (+)NCBIMGSCv36mm8
Celera64,751,503 - 4,786,857 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
Casd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,613,805 - 33,705,821 (+)NCBIGRCr8
mRatBN7.2432,659,196 - 32,739,228 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,658,748 - 32,739,202 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,645,725 - 37,702,070 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,571,845 - 33,628,190 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,942,159 - 32,034,177 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,638,280 - 29,693,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,639,154 - 29,691,928 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0429,551,430 - 29,603,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera428,238,919 - 28,269,259 (+)NCBICelera
Cytogenetic Map4q21NCBI
Casd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,236,401 - 11,277,537 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543211,236,403 - 11,277,462 (+)NCBIChiLan1.0ChiLan1.0
CASD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,975,393 - 20,026,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,977,088 - 20,025,712 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,537,075 - 19,586,035 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01419,793,148 - 19,842,140 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,793,074 - 19,842,928 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11419,944,849 - 19,993,882 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,679,946 - 19,728,909 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01419,937,265 - 19,986,245 (+)NCBIUU_Cfam_GSD_1.0
Casd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,279,257 - 33,315,135 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365855,547,596 - 5,590,546 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365855,549,161 - 5,584,181 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,276,908 - 74,347,588 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1974,276,533 - 74,347,608 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2981,454,473 - 81,549,776 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CASD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12154,483,449 - 54,532,507 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2154,482,713 - 54,531,319 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604249,790,616 - 49,839,546 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Casd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248131,280,943 - 1,326,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248131,281,253 - 1,325,995 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000061616   ⟹   ENSPPAP00000038710
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7100,053,248 - 100,095,633 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000061624   ⟹   ENSPPAP00000038718
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7100,053,248 - 100,095,633 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000061631   ⟹   ENSPPAP00000038725
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7100,057,468 - 100,096,887 (+)Ensembl
RefSeq Acc Id: XM_034964466   ⟹   XP_034820357
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26112,347,182 - 112,394,759 (+)NCBI
NHGRI_mPanPan17160,611,832 - 160,659,347 (+)NCBI
Mhudiblu_PPA_v0786,459,455 - 86,507,029 (+)NCBI
RefSeq Acc Id: XM_034964467   ⟹   XP_034820358
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26112,347,178 - 112,414,580 (+)NCBI
NHGRI_mPanPan17160,611,827 - 160,679,219 (+)NCBI
Mhudiblu_PPA_v0786,459,449 - 86,520,559 (+)NCBI
RefSeq Acc Id: XM_034964469   ⟹   XP_034820360
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26112,360,575 - 112,394,759 (+)NCBI
NHGRI_mPanPan17160,625,214 - 160,659,347 (+)NCBI
Mhudiblu_PPA_v0786,472,848 - 86,507,029 (+)NCBI
RefSeq Acc Id: XR_008625906
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26112,347,178 - 112,425,497 (+)NCBI
NHGRI_mPanPan17160,611,827 - 160,690,136 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034820357 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820358 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820360 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000038710.1
  ENSPPAP00000038718.1
  ENSPPAP00000038725.1
RefSeq Acc Id: XP_034820358   ⟸   XM_034964467
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034820357   ⟸   XM_034964466
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C9S8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034820360   ⟸   XM_034964469
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CCJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000038710   ⟸   ENSPPAT00000061616
RefSeq Acc Id: ENSPPAP00000038718   ⟸   ENSPPAT00000061624
RefSeq Acc Id: ENSPPAP00000038725   ⟸   ENSPPAT00000061631

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042059 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061616.1 UniProtKB/TrEMBL
  ENSPPAT00000061624.1 UniProtKB/TrEMBL
  ENSPPAT00000061631.1 UniProtKB/TrEMBL
InterPro Cas1_AcylTrans_dom UniProtKB/TrEMBL
NCBI Gene CASD1 ENTREZGENE
PANTHER N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE UniProtKB/TrEMBL
  N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE UniProtKB/TrEMBL
Pfam Cas1_AcylT UniProtKB/TrEMBL
UniProt A0A2R9C9S8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C9U4_PANPA UniProtKB/TrEMBL
  A0A2R9CCJ8 ENTREZGENE, UniProtKB/TrEMBL