ZNF398 (zinc finger protein 398) - Rat Genome Database

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Gene: ZNF398 (zinc finger protein 398) Pan paniscus
Analyze
Symbol: ZNF398
Name: zinc finger protein 398
RGD ID: 11769481
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26185,729,698 - 185,775,051 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1737,739,969 - 37,785,315 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07140,873,588 - 140,911,477 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,348,084 - 153,389,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,351,199 - 153,389,333 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZNF398
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26185,729,698 - 185,775,051 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1737,739,969 - 37,785,315 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07140,873,588 - 140,911,477 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,348,084 - 153,389,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,351,199 - 153,389,333 (+)Ensemblpanpan1.1panPan2
ZNF398
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,126,408 - 149,183,042 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,126,416 - 149,183,042 (+)EnsemblGRCh38hg38GRCh38
GRCh377148,823,500 - 148,880,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367148,454,441 - 148,511,052 (+)NCBINCBI36Build 36hg18NCBI36
Build 347148,282,465 - 148,317,767NCBI
Celera7143,492,686 - 143,549,312 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7142,900,949 - 142,957,456 (+)NCBIHuRef
CHM1_17148,831,593 - 148,888,532 (+)NCBICHM1_1
T2T-CHM13v2.07150,308,211 - 150,364,850 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,161,529 - 148,218,130 (+)NCBI
Zfp398
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39647,812,567 - 47,850,476 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl647,812,595 - 47,850,471 (+)EnsemblGRCm39 Ensembl
GRCm38647,835,633 - 47,873,542 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl647,835,661 - 47,873,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv37647,785,660 - 47,818,256 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36647,765,281 - 47,797,843 (+)NCBIMGSCv36mm8
Celera648,372,166 - 48,397,762 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map622.94NCBI
Zfp398
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,180,620 - 78,214,367 (+)NCBIGRCr8
mRatBN7.2476,849,672 - 76,881,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl476,849,681 - 76,876,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,061,986 - 82,088,379 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0477,836,324 - 77,862,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,277,788 - 76,304,182 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0477,519,018 - 77,546,517 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl477,519,028 - 77,545,589 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,188,819 - 142,215,380 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4475,975,752 - 76,002,315 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera471,798,375 - 71,824,733 (+)NCBICelera
Cytogenetic Map4q24NCBI
Znf398
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,424,599 - 4,452,516 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,424,602 - 4,451,026 (+)NCBIChiLan1.0ChiLan1.0
ZNF398
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,199,219 - 14,231,144 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,199,489 - 14,228,213 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1614,802,473 - 14,840,062 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01615,907,774 - 15,945,351 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1615,907,880 - 15,943,081 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,288,401 - 14,325,962 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01614,874,859 - 14,906,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,919,290 - 14,956,856 (+)NCBIUU_Cfam_GSD_1.0
Znf398
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,614,198 - 7,652,074 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,253,276 - 5,285,224 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,253,329 - 5,286,055 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100522942
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9109,171,636 - 109,200,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19109,171,631 - 109,214,760 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29120,110,744 - 120,151,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF398
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121117,712,837 - 117,741,875 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21117,712,925 - 117,738,832 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607213,667,065 - 13,692,688 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf398
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,585,027 - 6,619,734 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,577,354 - 6,619,709 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000031201   ⟹   ENSPPAP00000008565
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7153,351,199 - 153,389,333 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000031208   ⟹   ENSPPAP00000008572
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7153,351,891 - 153,389,333 (+)Ensembl
RefSeq Acc Id: XM_003820504   ⟹   XP_003820552
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26185,729,698 - 185,775,051 (+)NCBI
NHGRI_mPanPan1737,739,969 - 37,785,315 (+)NCBI
Mhudiblu_PPA_v07140,873,588 - 140,911,477 (+)NCBI
PanPan1.17153,351,199 - 153,389,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008973954   ⟹   XP_008972202
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26185,730,091 - 185,775,051 (+)NCBI
NHGRI_mPanPan1737,740,355 - 37,785,315 (+)NCBI
Mhudiblu_PPA_v07140,873,992 - 140,911,477 (+)NCBI
PanPan1.17153,351,620 - 153,389,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055115503   ⟹   XP_054971478
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26185,730,111 - 185,775,051 (+)NCBI
NHGRI_mPanPan1737,740,371 - 37,785,315 (+)NCBI
RefSeq Acc Id: XM_055115504   ⟹   XP_054971479
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26185,730,113 - 185,775,051 (+)NCBI
NHGRI_mPanPan1737,740,372 - 37,785,315 (+)NCBI
RefSeq Acc Id: XM_055115505   ⟹   XP_054971480
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26185,730,256 - 185,775,051 (+)NCBI
NHGRI_mPanPan1737,740,520 - 37,785,315 (+)NCBI
RefSeq Acc Id: XM_055115506   ⟹   XP_054971481
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26185,730,663 - 185,775,051 (+)NCBI
NHGRI_mPanPan1737,740,927 - 37,785,315 (+)NCBI
RefSeq Acc Id: XP_003820552   ⟸   XM_003820504
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZUC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008972202   ⟸   XM_008973954
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSPPAP00000008565   ⟸   ENSPPAT00000031201
Ensembl Acc Id: ENSPPAP00000008572   ⟸   ENSPPAT00000031208
RefSeq Acc Id: XP_054971478   ⟸   XM_055115503
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054971479   ⟸   XM_055115504
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054971480   ⟸   XM_055115505
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054971481   ⟸   XM_055115506
- Peptide Label: isoform X3
Protein Domains
C2H2-type   KRAB   KRAB-related


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027530 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031201.1 UniProtKB/TrEMBL
  ENSPPAT00000031208.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box-rel UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100969653 UniProtKB/TrEMBL
NCBI Gene ZNF398 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 746-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2HC_2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  KRAB_RELATED UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R8ZUC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZXQ9_PANPA UniProtKB/TrEMBL