VAPA (VAMP associated protein A) - Rat Genome Database

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Gene: VAPA (VAMP associated protein A) Pan paniscus
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Symbol: VAPA
Name: VAMP associated protein A
RGD ID: 11766230
Description: ENCODES a protein that exhibits FFAT motif binding (ortholog); identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN cell death (ortholog); COPII-coated vesicle budding (ortholog); endoplasmic reticulum organization (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); FOUND IN bicellular tight junction (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vesicle-associated membrane protein-associated protein A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1186,613,042 - 6,642,425 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,612,105 - 6,637,829 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0184,329,479 - 4,373,047 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
VAPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1186,613,042 - 6,642,425 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,612,105 - 6,637,829 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0184,329,479 - 4,373,047 (-)NCBIMhudiblu_PPA_v0panPan3
VAPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl189,914,016 - 9,960,021 (+)EnsemblGRCh38hg38GRCh38
GRCh38189,914,016 - 9,960,021 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37189,914,013 - 9,960,018 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,903,955 - 9,950,018 (+)NCBINCBI36hg18NCBI36
Build 34189,903,983 - 9,949,571NCBI
Celera189,797,515 - 9,843,493 (+)NCBI
Cytogenetic Map18p11.22NCBI
HuRef189,893,891 - 9,921,843 (+)NCBIHuRef
CHM1_1189,913,226 - 9,959,178 (+)NCBICHM1_1
Vapa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391765,887,048 - 65,925,441 (-)NCBIGRCm39mm39
GRCm39 Ensembl1765,885,322 - 65,920,550 (-)Ensembl
GRCm381765,580,053 - 65,616,462 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,578,327 - 65,613,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv371765,929,393 - 65,962,895 (-)NCBIGRCm37mm9NCBIm37
MGSCv361765,479,598 - 65,513,084 (-)NCBImm8
Celera1769,883,322 - 69,916,704 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
Vapa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29105,177,904 - 105,208,400 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl9105,177,907 - 105,207,847 (-)Ensembl
Rnor_6.09113,300,831 - 113,331,872 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,300,832 - 113,331,319 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09112,833,701 - 112,864,112 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,339,039 - 104,368,908 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19104,548,519 - 104,578,388 (-)NCBI
Celera9102,564,697 - 102,594,412 (-)NCBICelera
Cytogenetic Map9q37NCBI
Vapa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,270,850 - 2,298,227 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,274,248 - 2,309,461 (-)NCBIChiLan1.0ChiLan1.0
VAPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,844,927 - 75,891,811 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,845,000 - 75,889,076 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha775,242,387 - 75,289,206 (+)NCBI
ROS_Cfam_1.0775,905,356 - 75,948,878 (+)NCBI
UMICH_Zoey_3.1775,603,405 - 75,650,255 (+)NCBI
UNSW_CanFamBas_1.0775,621,438 - 75,668,178 (+)NCBI
UU_Cfam_GSD_1.0775,930,605 - 75,977,554 (+)NCBI
Vapa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,321,989 - 2,357,518 (-)NCBI
SpeTri2.0NW_0049366261,550,305 - 1,585,783 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,207,580 - 98,254,288 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1698,212,335 - 98,254,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
VAPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,784,786 - 68,825,333 (+)NCBI
ChlSab1.1 Ensembl1868,784,799 - 68,827,581 (+)Ensembl
Vero_WHO_p1.0NW_02366605043,739,425 - 43,782,261 (+)NCBI
Vapa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477018,411,921 - 18,447,004 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000022789   ⟹   ENSPPAP00000004968
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl186,612,105 - 6,637,829 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000022811   ⟹   ENSPPAP00000004977
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl186,613,042 - 6,637,829 (-)Ensembl
RefSeq Acc Id: XM_034943802   ⟹   XP_034799693
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0184,330,343 - 4,373,042 (-)NCBI
RefSeq Acc Id: XM_034943803   ⟹   XP_034799694
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0184,329,479 - 4,373,047 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034799693 (Get FASTA)   NCBI Sequence Viewer  
  XP_034799694 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034799694   ⟸   XM_034943803
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034799693   ⟸   XM_034943802
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000004968   ⟸   ENSPPAT00000022789
RefSeq Acc Id: ENSPPAP00000004977   ⟸   ENSPPAT00000022811


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000020801 Ensembl, ENTREZGENE
NCBI Gene VAPA ENTREZGENE