KCTD20 (potassium channel tetramerization domain containing 20) - Rat Genome Database

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Gene: KCTD20 (potassium channel tetramerization domain containing 20) Pan paniscus
Analyze
Symbol: KCTD20
Name: potassium channel tetramerization domain containing 20
RGD ID: 11765795
Description: INVOLVED IN positive regulation of phosphorylation (inferred); ASSOCIATED WITH genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein KCTD20; potassium channel tetramerisation domain containing 20
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,911,978 - 50,960,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,781,713 - 46,829,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,005,463 - 36,053,850 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,204,476 - 37,251,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,204,487 - 37,248,483 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCTD20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,911,978 - 50,960,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,781,713 - 46,829,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,005,463 - 36,053,850 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,204,476 - 37,251,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,204,487 - 37,248,483 (+)Ensemblpanpan1.1panPan2
KCTD20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,443,000 - 36,491,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,442,767 - 36,491,143 (+)EnsemblGRCh38hg38GRCh38
GRCh37636,410,777 - 36,458,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,518,522 - 36,566,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 34636,518,521 - 36,566,291NCBI
Celera637,965,608 - 38,013,359 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef636,129,425 - 36,177,184 (+)NCBIHuRef
CHM1_1636,412,353 - 36,460,117 (+)NCBICHM1_1
T2T-CHM13v2.0636,263,677 - 36,311,805 (+)NCBIT2T-CHM13v2.0
Kctd20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,171,420 - 29,188,523 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,170,924 - 29,188,523 (+)EnsemblGRCm39 Ensembl
GRCm381728,952,436 - 28,969,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,951,950 - 28,969,549 (+)EnsemblGRCm38mm10GRCm38
MGSCv371729,090,161 - 29,104,882 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,680,805 - 28,695,526 (+)NCBIMGSCv36mm8
Celera1729,509,170 - 29,523,884 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.03NCBI
Kctd20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,017,480 - 7,034,440 (+)NCBIGRCr8
mRatBN7.2207,015,828 - 7,032,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,015,833 - 7,032,761 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,727,752 - 7,744,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,089,614 - 7,106,511 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,564,556 - 7,581,457 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,205,897 - 6,222,818 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,205,903 - 6,219,936 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,454,394 - 8,471,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,244,665 - 7,253,138 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,221,733 - 7,253,365 (+)NCBI
Celera208,567,482 - 8,584,401 (+)NCBICelera
Cytogenetic Map20p12NCBI
Kctd20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554374,127,823 - 4,141,108 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554374,127,823 - 4,141,108 (+)NCBIChiLan1.0ChiLan1.0
KCTD20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,552,563 - 5,589,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,552,812 - 5,587,328 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,572,463 - 5,610,506 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,900,588 - 5,938,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,900,628 - 5,938,640 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,555,979 - 5,594,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,634,422 - 5,672,455 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,734,211 - 5,772,303 (+)NCBIUU_Cfam_GSD_1.0
Kctd20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,031,224 - 41,065,684 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,894,315 - 22,929,170 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,894,546 - 22,929,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,146,106 - 32,195,072 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,146,044 - 32,195,075 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,046,606 - 37,095,586 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,647,502 - 35,688,638 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,644,387 - 35,668,400 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604436,389,950 - 36,433,565 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475421,272,308 - 21,303,679 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000038681   ⟹   ENSPPAP00000015988
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl637,204,487 - 37,241,038 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000038715   ⟹   ENSPPAP00000016022
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl637,231,428 - 37,248,483 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000038717   ⟹   ENSPPAP00000016024
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl637,231,428 - 37,248,483 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000038721   ⟹   ENSPPAP00000016028
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl637,231,428 - 37,242,897 (+)Ensembl
RefSeq Acc Id: XM_034961975   ⟹   XP_034817866
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2550,911,978 - 50,960,315 (+)NCBI
NHGRI_mPanPan1646,781,713 - 46,829,950 (+)NCBI
Mhudiblu_PPA_v0636,005,463 - 36,053,850 (+)NCBI
RefSeq Acc Id: XM_034961979   ⟹   XP_034817870
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2550,939,259 - 50,960,315 (+)NCBI
NHGRI_mPanPan1646,808,905 - 46,829,950 (+)NCBI
Mhudiblu_PPA_v0636,034,764 - 36,053,850 (+)NCBI
RefSeq Acc Id: XM_034961981   ⟹   XP_034817872
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2550,911,978 - 50,960,315 (+)NCBI
NHGRI_mPanPan1646,781,742 - 46,829,950 (+)NCBI
Mhudiblu_PPA_v0636,005,659 - 36,053,850 (+)NCBI
RefSeq Acc Id: XM_055113543   ⟹   XP_054969518
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2550,912,046 - 50,960,315 (+)NCBI
NHGRI_mPanPan1646,781,778 - 46,829,950 (+)NCBI
RefSeq Acc Id: XM_055113544   ⟹   XP_054969519
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2550,915,474 - 50,960,315 (+)NCBI
NHGRI_mPanPan1646,790,311 - 46,829,950 (+)NCBI
RefSeq Acc Id: XM_055113545   ⟹   XP_054969520
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2550,939,261 - 50,960,315 (+)NCBI
NHGRI_mPanPan1646,808,907 - 46,829,950 (+)NCBI
RefSeq Acc Id: XM_055113546   ⟹   XP_054969521
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2550,912,132 - 50,960,315 (+)NCBI
NHGRI_mPanPan1646,781,774 - 46,829,950 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034817866   ⟸   XM_034961975
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AFB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817872   ⟸   XM_034961981
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AM43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817870   ⟸   XM_034961979
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AFB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000015988   ⟸   ENSPPAT00000038681
RefSeq Acc Id: ENSPPAP00000016024   ⟸   ENSPPAT00000038717
RefSeq Acc Id: ENSPPAP00000016022   ⟸   ENSPPAT00000038715
RefSeq Acc Id: ENSPPAP00000016028   ⟸   ENSPPAT00000038721
RefSeq Acc Id: XP_054969521   ⟸   XM_055113546
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AM43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969518   ⟸   XM_055113543
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AFB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969519   ⟸   XM_055113544
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AFB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969520   ⟸   XM_055113545
- Peptide Label: isoform X3
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031112 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038681.1 UniProtKB/TrEMBL
  ENSPPAT00000038715.1 UniProtKB/TrEMBL
  ENSPPAT00000038717.1 UniProtKB/TrEMBL
  ENSPPAT00000038721.1 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  BTBD10/KCTD20 UniProtKB/TrEMBL
  BTBD10/KCTD20_BTB/POZ UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene KCTD20 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD20 UniProtKB/TrEMBL
  PTHR21637 UniProtKB/TrEMBL
Pfam BTB_3 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A2R9AFB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AG89_PANPA UniProtKB/TrEMBL
  A0A2R9AGC4_PANPA UniProtKB/TrEMBL
  A0A2R9AM43 ENTREZGENE, UniProtKB/TrEMBL