GLI1 (GLI family zinc finger 1) - Rat Genome Database

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Gene: GLI1 (GLI family zinc finger 1) Pan paniscus
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Symbol: GLI1
Name: GLI family zinc finger 1
RGD ID: 11764443
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cerebellar cortex morphogenesis (ortholog); dorsal/ventral pattern formation (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Bardet-Biedl syndrome (ortholog); Chronic Experimental Pancreatitis (ortholog); FOUND IN axoneme (ortholog); cilium (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: zinc finger protein GLI1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11231,710,051 - 31,722,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,710,057 - 31,722,473 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01231,453,759 - 31,466,194 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (ISO)
cilium  (ISO)
cytoplasm  (ISO)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
GLI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11231,710,051 - 31,722,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,710,057 - 31,722,473 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01231,453,759 - 31,466,194 (-)NCBIMhudiblu_PPA_v0panPan3
GLI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1257,459,785 - 57,472,268 (+)EnsemblGRCh38hg38GRCh38
GRCh381257,459,785 - 57,472,451 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371257,853,568 - 57,866,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,140,201 - 56,152,312 (+)NCBINCBI36hg18NCBI36
Build 341256,140,200 - 56,152,312NCBI
Celera1257,507,905 - 57,520,038 (+)NCBI
Cytogenetic Map12q13.3NCBI
HuRef1254,891,792 - 54,903,925 (+)NCBIHuRef
CHM1_11257,822,031 - 57,834,164 (+)NCBICHM1_1
Gli1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,165,751 - 127,177,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl10127,165,751 - 127,177,843 (-)Ensembl
GRCm3810127,329,882 - 127,341,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,329,882 - 127,341,974 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,766,938 - 126,778,635 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610126,732,834 - 126,744,528 (-)NCBImm8
Celera10129,722,485 - 129,734,187 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Gli1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2763,156,926 - 63,169,579 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl763,156,926 - 63,169,251 (-)Ensembl
Rnor_6.0770,620,794 - 70,633,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,620,766 - 70,630,338 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,795,073 - 70,807,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,288,291 - 67,297,461 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1767,311,850 - 67,313,540 (-)NCBI
Celera760,297,162 - 60,306,332 (-)NCBICelera
Cytogenetic Map7q22NCBI
Gli1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,185,225 - 5,193,196 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,181,761 - 5,193,500 (+)NCBIChiLan1.0ChiLan1.0
GLI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,565,306 - 1,575,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,565,244 - 1,575,982 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,628,322 - 1,639,223 (+)NCBI
ROS_Cfam_1.0101,574,108 - 1,585,023 (+)NCBI
UMICH_Zoey_3.1101,552,194 - 1,563,093 (+)NCBI
UNSW_CanFamBas_1.0101,793,705 - 1,804,582 (+)NCBI
UU_Cfam_GSD_1.0101,919,034 - 1,929,946 (+)NCBI
Gli1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,240,448 - 57,247,984 (-)NCBI
SpeTri2.0NW_0049366461,622,308 - 1,629,787 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,732,516 - 22,747,421 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,736,325 - 22,747,421 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,835,305 - 24,838,895 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,371,929 - 53,384,339 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,375,558 - 53,385,269 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037192,582,687 - 192,595,094 (-)NCBIVero_WHO_p1.0
Gli1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480210,483,279 - 10,494,539 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000063968   ⟹   ENSPPAP00000041047
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1231,710,057 - 31,722,473 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063973   ⟹   ENSPPAP00000041052
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1231,710,258 - 31,718,603 (-)Ensembl
RefSeq Acc Id: XM_003824854   ⟹   XP_003824902
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11231,710,051 - 31,722,473 (-)NCBI
Mhudiblu_PPA_v01231,453,759 - 31,466,194 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003824855   ⟹   XP_003824903
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11231,710,051 - 31,722,473 (-)NCBI
Mhudiblu_PPA_v01231,453,759 - 31,466,143 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008978500   ⟹   XP_008976748
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11231,710,258 - 31,721,790 (-)NCBI
Mhudiblu_PPA_v01231,453,871 - 31,465,481 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008978501   ⟹   XP_008976749
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11231,710,258 - 31,722,473 (-)NCBI
Mhudiblu_PPA_v01231,453,871 - 31,466,143 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008978502   ⟹   XP_008976750
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11231,710,051 - 31,722,473 (-)NCBI
Mhudiblu_PPA_v01231,453,871 - 31,466,145 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003824903   ⟸   XM_003824855
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008976750   ⟸   XM_008978502
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003824902   ⟸   XM_003824854
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008976749   ⟸   XM_008978501
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008976748   ⟸   XM_008978500
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000041047   ⟸   ENSPPAT00000063968
RefSeq Acc Id: ENSPPAP00000041052   ⟸   ENSPPAT00000063973


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043144 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000041047 ENTREZGENE
  ENSPPAP00000041052 ENTREZGENE
NCBI Gene GLI1 ENTREZGENE