LOC100978434 (C-type lectin domain family 4 member M) - Rat Genome Database

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Gene: LOC100978434 (C-type lectin domain family 4 member M) Pan paniscus
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Symbol: LOC100978434
Name: C-type lectin domain family 4 member M
RGD ID: 11763478
Description: ENCODES a protein that exhibits (1->3)-beta-D-glucan binding (ortholog); calcium-dependent protein binding (ortholog); mannose binding (ortholog); INVOLVED IN detection of bacterium (ortholog); detection of yeast (ortholog); endocytosis (ortholog); ASSOCIATED WITH bacteriuria (ortholog); Chronic Hepatitis C (ortholog); extrapulmonary tuberculosis (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CLEC4M; immunity adhesion receptor L-SIGN
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1197,916,430 - 7,922,634 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0197,062,961 - 7,069,381 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC100978434
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1197,916,430 - 7,922,634 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0197,062,961 - 7,069,381 (+)NCBIMhudiblu_PPA_v0panPan3
CLEC4M
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl197,763,210 - 7,769,605 (+)EnsemblGRCh38hg38GRCh38
GRCh38197,763,243 - 7,769,605 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37197,828,129 - 7,834,491 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,734,081 - 7,740,491 (+)NCBINCBI36hg18NCBI36
Celera197,699,445 - 7,705,764 (+)NCBI
Cytogenetic Map19p13.2NCBI
HuRef197,498,098 - 7,504,416 (+)NCBIHuRef
CHM1_1197,827,770 - 7,834,226 (+)NCBICHM1_1
Cd209b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,967,655 - 3,976,841 (-)NCBIGRCm39mm39
GRCm39 Ensembl83,967,655 - 3,976,844 (-)Ensembl
GRCm3883,917,655 - 3,926,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,917,655 - 3,926,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,917,657 - 3,926,814 (-)NCBIGRCm37mm9NCBIm37
MGSCv3683,917,657 - 3,926,814 (-)NCBImm8
Celera83,005,643 - 3,014,800 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
Clec4m
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2121,915,902 - 1,924,529 (-)NCBI
Rnor_6.0 Ensembl122,816,065 - 2,826,378 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0122,817,633 - 2,826,303 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0124,967,129 - 4,975,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,256,452 - 2,265,053 (+)NCBIRGSC3.4rn4RGSC3.4
Celera123,768,182 - 3,776,781 (-)NCBICelera
Cytogenetic Map12p12NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003809995   ⟹   XP_003810043
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1197,916,430 - 7,922,634 (+)NCBI
Mhudiblu_PPA_v0197,062,961 - 7,069,381 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004667900
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0197,064,680 - 7,069,381 (+)NCBI
RefSeq Acc Id: XR_610387
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1197,916,430 - 7,922,634 (+)NCBI
Mhudiblu_PPA_v0197,062,968 - 7,069,381 (+)NCBI
Sequence:
RefSeq Acc Id: XR_610388
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1197,916,479 - 7,922,634 (+)NCBI
Mhudiblu_PPA_v0197,062,968 - 7,069,381 (+)NCBI
Sequence:
RefSeq Acc Id: XR_610389
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1197,916,435 - 7,922,634 (+)NCBI
Mhudiblu_PPA_v0197,062,968 - 7,069,381 (+)NCBI
Sequence:
RefSeq Acc Id: XR_610390
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1197,916,485 - 7,922,634 (+)NCBI
Mhudiblu_PPA_v0197,062,968 - 7,069,381 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810043 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABW34400 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003810043   ⟸   XM_003809995
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene CLEC4M ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 LOC100978434  C-type lectin domain family 4 member M  CLEC4M    Symbol and/or name change 5135510 APPROVED