POMK (protein O-mannose kinase) - Rat Genome Database
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Gene: POMK (protein O-mannose kinase) Pan paniscus
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Symbol: POMK
Name: protein O-mannose kinase
RGD ID: 11762801
Description: ENCODES a protein that exhibits carbohydrate kinase activity (ortholog); phosphotransferase activity, alcohol group as acceptor (ortholog); INVOLVED IN brain development (ortholog); carbohydrate phosphorylation (ortholog); learning or memory (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); IMMUNODEFICIENCY 15 (ortholog); mucopolysaccharidosis type IIIC (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: protein-O-mannose kinase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,781,799 - 39,811,239 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,790,758 - 39,811,239 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,340,500 - 42,371,426 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
POMK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,781,799 - 39,811,239 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,790,758 - 39,811,239 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,340,500 - 42,371,426 (+)NCBIMhudiblu_PPA_v0panPan3
POMK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl843,093,506 - 43,123,434 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl843,093,498 - 43,131,180 (+)EnsemblGRCh38hg38GRCh38
GRCh38843,093,515 - 43,123,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37842,948,658 - 42,978,577 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36843,067,818 - 43,097,480 (+)NCBINCBI36hg18NCBI36
Celera841,897,360 - 41,927,029 (+)NCBI
Cytogenetic Map8p11.21NCBI
HuRef841,471,354 - 41,501,057 (+)NCBIHuRef
CHM1_1842,995,571 - 43,025,246 (+)NCBICHM1_1
Pomk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,470,632 - 26,484,149 (-)NCBIGRCm39mm39
GRCm39 Ensembl826,470,632 - 26,484,161 (-)Ensembl
GRCm38825,980,604 - 25,994,121 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl825,980,604 - 25,994,133 (-)EnsemblGRCm38mm10GRCm38
MGSCv37827,091,076 - 27,104,593 (-)NCBIGRCm37mm9NCBIm37
MGSCv36827,446,149 - 27,459,666 (-)NCBImm8
Celera827,450,326 - 27,463,856 (-)NCBICelera
Cytogenetic Map8A2NCBI
Pomk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21666,085,569 - 66,101,360 (+)NCBI
Rnor_6.0 Ensembl1670,859,280 - 70,869,634 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01670,854,825 - 70,869,653 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01670,523,618 - 70,533,991 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,462,989 - 70,473,362 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11670,463,253 - 70,473,628 (+)NCBI
Celera1663,999,019 - 64,009,392 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
Pomk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,309,564 - 13,317,825 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,299,176 - 13,318,535 (+)NCBIChiLan1.0ChiLan1.0
POMK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1622,701,736 - 22,719,229 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11622,699,552 - 22,722,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pomk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936570335,668 - 354,839 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11711,957,615 - 11,978,919 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
POMK
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1841,102,872 - 41,137,866 (+)NCBI
ChlSab1.1 Ensembl841,098,891 - 41,131,309 (+)Ensembl
Pomk
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624992196,792 - 222,638 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008976894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000049362   ⟹   ENSPPAP00000026529
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl839,790,758 - 39,811,239 (+)Ensembl
RefSeq Acc Id: XM_008976894   ⟹   XP_008975142
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1839,781,799 - 39,811,239 (+)NCBI
Mhudiblu_PPA_v0842,340,500 - 42,371,426 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008975142 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008975142   ⟸   XM_008976894
- Sequence:
RefSeq Acc Id: ENSPPAP00000026529   ⟸   ENSPPAT00000049362
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036365 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000026529 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000049362 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  POMK UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
KEGG Report pps:100985143 UniProtKB/TrEMBL
NCBI Gene POMK ENTREZGENE
PANTHER PTHR22618 UniProtKB/TrEMBL
Pfam Pkinase_Tyr UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A2R9BAA0_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-30 POMK  protein O-mannose kinase    protein-O-mannose kinase  Symbol and/or name change 5135510 APPROVED