LOC100967708 (olfactory receptor 2V2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100967708 (olfactory receptor 2V2) Pan paniscus
Analyze
Symbol: LOC100967708 (Ensembl: OR2V2)
Name: olfactory receptor 2V2 (Ensembl:olfactory receptor family 2 subfamily V member 2)
RGD ID: 11762330
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24176,137,715 - 176,149,507 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,301,781 - 174,313,573 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,324,455 - 176,326,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,638,112 - 183,639,059 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,638,112 - 183,639,059 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100967708
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24176,137,715 - 176,149,507 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,301,781 - 174,313,573 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,324,455 - 176,326,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,638,112 - 183,639,059 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,638,112 - 183,639,059 (+)Ensemblpanpan1.1panPan2
OR2V2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385181,147,586 - 181,159,285 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5181,147,586 - 181,159,285 (+)EnsemblGRCh38hg38GRCh38
GRCh375180,574,586 - 180,586,285 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,514,549 - 180,515,496 (+)NCBINCBI36Build 36hg18NCBI36
Build 345180,514,548 - 180,515,496NCBI
Celera5176,209,206 - 176,210,153 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5175,309,396 - 175,310,343 (+)NCBIHuRef
CHM1_15180,013,329 - 180,014,272 (+)NCBICHM1_1
T2T-CHM13v2.05181,707,607 - 181,719,306 (+)NCBIT2T-CHM13v2.0
Or2v2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,003,604 - 49,004,584 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,000,809 - 49,005,701 (-)EnsemblGRCm39 Ensembl
GRCm381149,112,777 - 49,113,757 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,109,982 - 49,114,874 (-)EnsemblGRCm38mm10GRCm38
MGSCv371148,926,279 - 48,927,259 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361148,956,200 - 48,957,180 (-)NCBIMGSCv36mm8
Celera1153,675,193 - 53,676,173 (-)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.12NCBI
Or2v2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81033,820,968 - 33,821,915 (-)NCBIGRCr8
mRatBN7.21033,319,844 - 33,320,791 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,316,034 - 33,321,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1037,999,830 - 38,000,777 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,538,242 - 6,539,189 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01032,993,472 - 32,994,419 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,300,250 - 34,301,197 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,300,250 - 34,301,197 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,081,863 - 34,082,810 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,219,857 - 34,220,804 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11034,220,905 - 34,221,853 (-)NCBI
Celera1032,704,974 - 32,705,921 (-)NCBICelera
Cytogenetic Map10q21NCBI
LOC110259611
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1257,473,702 - 57,474,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103245141
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12382,703,382 - 82,705,056 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2382,704,055 - 82,705,002 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366651917,132 - 18,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_057302401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000026997   ⟹   ENSPPAP00000006158
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5183,638,112 - 183,639,059 (+)Ensembl
RefSeq Acc Id: XM_057302401   ⟹   XP_057158384
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24176,137,715 - 176,149,507 (+)NCBI
NHGRI_mPanPan15174,301,781 - 174,313,573 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057158384 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006158.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000006158   ⟸   ENSPPAT00000026997
RefSeq Acc Id: XP_057158384   ⟸   XM_057302401
- UniProtKB: A0A2R8ZMI4 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000024485 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000026997.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report pps:100967708 UniProtKB/TrEMBL
NCBI Gene LOC100967708 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 2V2 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R8ZMI4 ENTREZGENE, UniProtKB/TrEMBL