CCDC93 (coiled-coil domain containing 93) - Rat Genome Database

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Gene: CCDC93 (coiled-coil domain containing 93) Pan paniscus
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Symbol: CCDC93
Name: coiled-coil domain containing 93
RGD ID: 11758776
Description: INVOLVED IN endocytic recycling (inferred); Golgi to plasma membrane transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 93
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21319,941,925 - 20,042,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B19,956,897 - 20,055,921 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B4,873,566 - 4,972,556 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B118,458,782 - 118,557,818 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B118,458,782 - 118,557,824 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCDC93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21319,941,925 - 20,042,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B19,956,897 - 20,055,921 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B4,873,566 - 4,972,556 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B118,458,782 - 118,557,818 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B118,458,782 - 118,557,824 (-)Ensemblpanpan1.1panPan2
CCDC93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382117,915,481 - 118,014,070 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2117,915,478 - 118,014,133 (-)EnsemblGRCh38hg38GRCh38
GRCh372118,673,057 - 118,771,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362118,389,617 - 118,488,167 (-)NCBINCBI36Build 36hg18NCBI36
Celera2112,000,384 - 112,098,933 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2111,000,236 - 111,098,844 (-)NCBIHuRef
CHM1_12118,676,915 - 118,775,559 (-)NCBICHM1_1
T2T-CHM13v2.02118,348,803 - 118,447,355 (-)NCBIT2T-CHM13v2.0
Ccdc93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,358,796 - 121,434,189 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,358,778 - 121,434,189 (+)EnsemblGRCm39 Ensembl
GRCm381121,431,067 - 121,506,460 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,431,049 - 121,506,460 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,327,644 - 123,403,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,258,613 - 123,329,139 (+)NCBIMGSCv36mm8
Celera1124,071,918 - 124,147,507 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.97NCBI
Ccdc93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81335,160,354 - 35,233,877 (+)NCBIGRCr8
mRatBN7.21332,607,618 - 32,675,993 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1332,607,587 - 32,676,023 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1335,176,112 - 35,244,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01336,464,001 - 36,532,385 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01333,738,523 - 33,806,919 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01337,400,455 - 37,473,973 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1337,400,476 - 37,468,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01342,558,308 - 42,626,674 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41333,465,846 - 33,534,212 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1332,475,308 - 32,543,487 (+)NCBICelera
Cytogenetic Map13q11NCBI
Ccdc93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545911,668,605 - 11,748,327 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545911,668,605 - 11,748,327 (+)NCBIChiLan1.0ChiLan1.0
CCDC93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11931,879,585 - 31,971,341 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1931,879,616 - 31,970,543 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1932,146,554 - 32,242,171 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01933,273,242 - 33,366,927 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1933,273,275 - 33,366,924 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11931,947,665 - 32,043,081 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01932,117,919 - 32,213,555 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01933,304,962 - 33,400,474 (+)NCBIUU_Cfam_GSD_1.0
Ccdc93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530389,327,051 - 89,411,811 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646952,208,937 - 52,286,026 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646952,204,357 - 52,290,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1523,492,948 - 23,593,745 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11523,492,929 - 23,593,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21526,877,277 - 26,974,113 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11012,290,875 - 12,382,447 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1012,290,937 - 12,380,363 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606110,240,206 - 10,332,650 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473227,208,938 - 27,293,014 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473227,208,928 - 27,297,904 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000056485   ⟹   ENSPPAP00000033609
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B118,458,782 - 118,557,824 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056505   ⟹   ENSPPAP00000033629
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B118,470,342 - 118,552,607 (-)Ensembl
RefSeq Acc Id: XM_003819129   ⟹   XP_003819177
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21319,941,925 - 20,042,300 (-)NCBI
NHGRI_mPanPan12B19,956,897 - 20,055,921 (-)NCBI
Mhudiblu_PPA_v02B4,873,566 - 4,972,555 (-)NCBI
PanPan1.12B118,458,782 - 118,557,818 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972484   ⟹   XP_008970732
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21319,941,925 - 20,042,302 (-)NCBI
NHGRI_mPanPan12B19,956,897 - 20,055,914 (-)NCBI
Mhudiblu_PPA_v02B4,873,566 - 4,972,555 (-)NCBI
PanPan1.12B118,458,782 - 118,557,818 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063595115   ⟹   XP_063451185
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21319,961,705 - 20,042,308 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003819177 (Get FASTA)   NCBI Sequence Viewer  
  XP_008970732 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451185 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033609.1
  ENSPPAP00000033629.1
RefSeq Acc Id: XP_008970732   ⟸   XM_008972484
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C506 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003819177   ⟸   XM_003819129
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C506 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000033609   ⟸   ENSPPAT00000056485
RefSeq Acc Id: ENSPPAP00000033629   ⟸   ENSPPAT00000056505
RefSeq Acc Id: XP_063451185   ⟸   XM_063595115
- Peptide Label: isoform X3

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039658 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056485.1 UniProtKB/TrEMBL
  ENSPPAT00000056505.1 UniProtKB/TrEMBL
InterPro CCDC93 UniProtKB/TrEMBL
  CCDC93_CC UniProtKB/TrEMBL
  CCDC93_N UniProtKB/TrEMBL
NCBI Gene CCDC93 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 93 UniProtKB/TrEMBL
  PTHR16441 UniProtKB/TrEMBL
Pfam CCDC93_CC UniProtKB/TrEMBL
  CCDC93_N UniProtKB/TrEMBL
UniProt A0A2R9C506 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C525_PANPA UniProtKB/TrEMBL