IVD (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 16 | 29,642,102 - 29,672,428 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 15 | 33,793,458 - 33,823,800 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 15 | 19,342,283 - 19,372,465 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 15 | 37,596,455 - 37,626,708 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 15 | 37,596,688 - 37,609,902 (+) | Ensembl | panpan1.1 | | panPan2 | |
|
IVD (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 15 | 40,405,795 - 40,435,947 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 15 | 40,405,485 - 40,435,947 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 15 | 40,697,996 - 40,728,146 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 15 | 38,484,978 - 38,498,355 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 15 | 38,484,977 - 38,498,355 | NCBI | | | | | Celera | 15 | 17,463,670 - 17,479,493 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | q15.1 | NCBI | | | | | HuRef | 15 | 17,541,064 - 17,556,886 (+) | NCBI | | HuRef | | | CHM1_1 | 15 | 40,817,565 - 40,833,386 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 15 | 38,212,996 - 38,243,333 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Ivd (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 2 | 118,692,475 - 118,713,388 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 118,692,435 - 118,713,390 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 118,861,959 - 118,882,909 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 118,861,954 - 118,882,909 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 118,687,736 - 118,707,093 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 118,553,441 - 118,572,798 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 120,013,107 - 120,032,696 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | E5 | NCBI | | | | | cM Map | 2 | 59.64 | NCBI | | | | |
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Ivd (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 3 | 126,305,584 - 126,326,016 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 105,851,710 - 105,872,144 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 105,851,683 - 105,872,575 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 3 | 109,524,766 - 109,545,235 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 3 | 118,120,320 - 118,140,785 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 3 | 115,780,686 - 115,801,150 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 3 | 110,669,355 - 110,689,789 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 110,669,312 - 110,690,173 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 117,207,292 - 117,227,726 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 3 | 105,374,429 - 105,394,861 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 3 | 105,270,846 - 105,291,661 (+) | NCBI | | | | | Celera | 3 | 104,765,745 - 104,785,979 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | q35 | NCBI | | | | |
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Ivd (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955416 | 7,327,557 - 7,346,027 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955416 | 7,327,557 - 7,341,533 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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IVD (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 30 | 7,584,122 - 7,594,599 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 30 | 7,584,086 - 7,594,150 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 30 | 7,637,893 - 7,648,417 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 30 | 7,709,948 - 7,720,478 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 30 | 7,688,665 - 7,720,482 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 30 | 7,634,265 - 7,644,784 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 30 | 7,740,300 - 7,750,859 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 30 | 7,869,140 - 7,879,708 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Ivd (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024408640 | 86,023,008 - 86,036,677 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936471 | 3,871,148 - 3,885,241 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936471 | 3,871,152 - 3,883,521 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
IVD (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 1 | 130,893,984 - 130,910,586 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 130,896,488 - 130,910,582 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 145,981,544 - 145,995,640 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
IVD (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 26 | 42,592,387 - 42,605,931 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 26 | 42,589,709 - 42,606,199 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666048 | 98,364,384 - 98,377,989 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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