IVD (isovaleryl-CoA dehydrogenase) - Rat Genome Database

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Gene: IVD (isovaleryl-CoA dehydrogenase) Pan paniscus
Analyze
Symbol: IVD
Name: isovaleryl-CoA dehydrogenase
RGD ID: 11756798
Description: ENCODES a protein that exhibits identical protein binding (ortholog); isovaleryl-CoA dehydrogenase activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: isovaleryl-CoA dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,642,102 - 29,672,428 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,793,458 - 33,823,800 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,342,283 - 19,372,465 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,596,455 - 37,626,708 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,596,688 - 37,609,902 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IVD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,642,102 - 29,672,428 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,793,458 - 33,823,800 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,342,283 - 19,372,465 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,596,455 - 37,626,708 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,596,688 - 37,609,902 (+)Ensemblpanpan1.1panPan2
IVD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,405,795 - 40,435,947 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,405,485 - 40,435,947 (+)EnsemblGRCh38hg38GRCh38
GRCh371540,697,996 - 40,728,146 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,484,978 - 38,498,355 (+)NCBINCBI36Build 36hg18NCBI36
Build 341538,484,977 - 38,498,355NCBI
Celera1517,463,670 - 17,479,493 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,541,064 - 17,556,886 (+)NCBIHuRef
CHM1_11540,817,565 - 40,833,386 (+)NCBICHM1_1
T2T-CHM13v2.01538,212,996 - 38,243,333 (+)NCBIT2T-CHM13v2.0
Ivd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,692,475 - 118,713,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,692,435 - 118,713,390 (+)EnsemblGRCm39 Ensembl
GRCm382118,861,959 - 118,882,909 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,861,954 - 118,882,909 (+)EnsemblGRCm38mm10GRCm38
MGSCv372118,687,736 - 118,707,093 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,553,441 - 118,572,798 (+)NCBIMGSCv36mm8
Celera2120,013,107 - 120,032,696 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.64NCBI
Ivd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,305,584 - 126,326,016 (+)NCBIGRCr8
mRatBN7.23105,851,710 - 105,872,144 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,851,683 - 105,872,575 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,524,766 - 109,545,235 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,120,320 - 118,140,785 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,780,686 - 115,801,150 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,669,355 - 110,689,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,669,312 - 110,690,173 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,207,292 - 117,227,726 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,374,429 - 105,394,861 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,270,846 - 105,291,661 (+)NCBI
Celera3104,765,745 - 104,785,979 (+)NCBICelera
Cytogenetic Map3q35NCBI
Ivd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,327,557 - 7,346,027 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,327,557 - 7,341,533 (+)NCBIChiLan1.0ChiLan1.0
IVD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,584,122 - 7,594,599 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,584,086 - 7,594,150 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,637,893 - 7,648,417 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,709,948 - 7,720,478 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,688,665 - 7,720,482 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,634,265 - 7,644,784 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,740,300 - 7,750,859 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,869,140 - 7,879,708 (+)NCBIUU_Cfam_GSD_1.0
Ivd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,023,008 - 86,036,677 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,871,148 - 3,885,241 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,871,152 - 3,883,521 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IVD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,893,984 - 130,910,586 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,896,488 - 130,910,582 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,981,544 - 145,995,640 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IVD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,592,387 - 42,605,931 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,589,709 - 42,606,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,364,384 - 98,377,989 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003826575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008951970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008951971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008951972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008951973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024925672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034938532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034938533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034938534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034938535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000034016   ⟹   ENSPPAP00000011361
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1537,596,688 - 37,609,902 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034018   ⟹   ENSPPAP00000011363
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1537,596,789 - 37,609,345 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034019   ⟹   ENSPPAP00000011364
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1537,596,798 - 37,599,752 (+)Ensembl
RefSeq Acc Id: XM_003826575   ⟹   XP_003826623
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,657,787 (+)NCBI
NHGRI_mPanPan11533,793,496 - 33,809,142 (+)NCBI
Mhudiblu_PPA_v01519,342,292 - 19,355,387 (+)NCBI
PanPan1.11537,596,688 - 37,609,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008951970   ⟹   XP_008950218
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,672,428 (+)NCBI
NHGRI_mPanPan11533,793,496 - 33,823,800 (+)NCBI
Mhudiblu_PPA_v01519,342,288 - 19,372,465 (+)NCBI
PanPan1.11537,596,455 - 37,626,708 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008951971   ⟹   XP_008950219
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,263 - 29,672,428 (+)NCBI
NHGRI_mPanPan11533,793,807 - 33,823,800 (+)NCBI
Mhudiblu_PPA_v01519,342,486 - 19,372,465 (+)NCBI
PanPan1.11537,596,980 - 37,626,708 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024925672   ⟹   XP_024781440
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,263 - 29,657,787 (+)NCBI
NHGRI_mPanPan11533,793,656 - 33,809,142 (+)NCBI
Mhudiblu_PPA_v01519,342,491 - 19,355,387 (+)NCBI
PanPan1.11537,596,986 - 37,609,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034938534   ⟹   XP_034794425
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,254 - 29,657,787 (+)NCBI
NHGRI_mPanPan11533,793,611 - 33,809,142 (+)NCBI
Mhudiblu_PPA_v01519,342,289 - 19,355,387 (+)NCBI
RefSeq Acc Id: XM_055098622   ⟹   XP_054954597
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,672,428 (+)NCBI
NHGRI_mPanPan11533,793,458 - 33,823,800 (+)NCBI
RefSeq Acc Id: XM_055098623   ⟹   XP_054954598
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,263 - 29,672,428 (+)NCBI
NHGRI_mPanPan11533,793,807 - 33,823,800 (+)NCBI
RefSeq Acc Id: XM_055098624   ⟹   XP_054954599
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,246 - 29,672,428 (+)NCBI
NHGRI_mPanPan11533,793,604 - 33,823,800 (+)NCBI
RefSeq Acc Id: XM_055098625   ⟹   XP_054954600
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,657,787 (+)NCBI
NHGRI_mPanPan11533,793,570 - 33,809,142 (+)NCBI
RefSeq Acc Id: XM_055098626   ⟹   XP_054954601
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,672,159 (+)NCBI
NHGRI_mPanPan11533,793,570 - 33,823,530 (+)NCBI
RefSeq Acc Id: XM_055098628   ⟹   XP_054954603
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,654,599 (+)NCBI
NHGRI_mPanPan11533,793,570 - 33,805,954 (+)NCBI
RefSeq Acc Id: XM_055098629   ⟹   XP_054954604
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,263 - 29,654,599 (+)NCBI
NHGRI_mPanPan11533,793,673 - 33,805,954 (+)NCBI
RefSeq Acc Id: XM_055098630   ⟹   XP_054954605
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,672,113 (+)NCBI
NHGRI_mPanPan11533,793,570 - 33,823,479 (+)NCBI
RefSeq Acc Id: XM_063596543   ⟹   XP_063452613
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,672,428 (+)NCBI
RefSeq Acc Id: XM_063596544   ⟹   XP_063452614
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,654,599 (+)NCBI
RefSeq Acc Id: XM_063596545   ⟹   XP_063452615
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,657,787 (+)NCBI
RefSeq Acc Id: XM_063596546   ⟹   XP_063452616
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21629,642,102 - 29,672,428 (+)NCBI
RefSeq Acc Id: XP_008950218   ⟸   XM_008951970
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003826623   ⟸   XM_003826575
- Peptide Label: isoform X7
- UniProtKB: A0A2R9A7H7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008950219   ⟸   XM_008951971
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_024781440   ⟸   XM_024925672
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_034794425   ⟸   XM_034938534
- Peptide Label: isoform X11
- UniProtKB: A0A2R9A279 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000011363   ⟸   ENSPPAT00000034018
RefSeq Acc Id: ENSPPAP00000011364   ⟸   ENSPPAT00000034019
RefSeq Acc Id: ENSPPAP00000011361   ⟸   ENSPPAT00000034016
RefSeq Acc Id: XP_054954597   ⟸   XM_055098622
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054954601   ⟸   XM_055098626
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054954605   ⟸   XM_055098630
- Peptide Label: isoform X15
RefSeq Acc Id: XP_054954600   ⟸   XM_055098625
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054954603   ⟸   XM_055098628
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054954599   ⟸   XM_055098624
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054954604   ⟸   XM_055098629
- Peptide Label: isoform X14
RefSeq Acc Id: XP_054954598   ⟸   XM_055098623
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063452613   ⟸   XM_063596543
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063452616   ⟸   XM_063596546
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063452615   ⟸   XM_063596545
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063452614   ⟸   XM_063596544
- Peptide Label: isoform X13

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034016.1 UniProtKB/TrEMBL
  ENSPPAT00000034018.1 UniProtKB/TrEMBL
  ENSPPAT00000034019.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro Acyl-CoA_DH_CS UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
  IVD UniProtKB/TrEMBL
KEGG Report pps:100973247 UniProtKB/TrEMBL
NCBI Gene IVD ENTREZGENE
PANTHER ACYL-COA DEHYDROGENASE UniProtKB/TrEMBL
  ISOVALERYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
PROSITE ACYL_COA_DH_1 UniProtKB/TrEMBL
  ACYL_COA_DH_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt A0A2R9A279 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A3B3_PANPA UniProtKB/TrEMBL
  A0A2R9A7H7 ENTREZGENE, UniProtKB/TrEMBL