KRBA2 (KRAB-A domain containing 2) - Rat Genome Database

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Gene: KRBA2 (KRAB-A domain containing 2) Pan paniscus
Analyze
Symbol: KRBA2
Name: KRAB-A domain containing 2
RGD ID: 11755934
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); INVOLVED IN DNA integration (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KRAB-A domain-containing protein 2
RGD Orthologs
Human
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,378,195 - 65,390,138 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,187,651 - 70,197,428 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,282,744 - 43,291,426 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,016,394 - 48,024,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,021,804 - 48,024,433 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
KRBA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,378,195 - 65,390,138 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,187,651 - 70,197,428 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,282,744 - 43,291,426 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,016,394 - 48,024,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,021,804 - 48,024,433 (+)Ensemblpanpan1.1panPan2
KRBA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,358,822 - 8,376,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,356,902 - 8,376,704 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,262,140 - 8,280,022 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,212,698 - 8,215,583 (-)NCBINCBI36Build 36hg18NCBI36
Celera178,302,733 - 8,305,618 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,166,665 - 8,169,479 (-)NCBIHuRef
CHM1_1178,280,865 - 8,283,750 (-)NCBICHM1_1
T2T-CHM13v2.0178,265,059 - 8,282,925 (-)NCBIT2T-CHM13v2.0
KRBA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,144,223 - 33,151,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,147,045 - 33,150,779 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,270,921 - 33,287,052 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,238,179 - 33,254,340 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,247,896 - 33,254,306 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,205,324 - 33,221,469 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,160,591 - 33,176,730 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,340,643 - 33,356,800 (-)NCBIUU_Cfam_GSD_1.0
KRBA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,726,040 - 7,733,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,726,239 - 7,728,647 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605913,663,934 - 13,671,686 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000037602   ⟹   ENSPPAP00000014914
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1748,021,804 - 48,024,433 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000037604   ⟹   ENSPPAP00000014916
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1748,021,964 - 48,024,284 (+)Ensembl
RefSeq Acc Id: XM_034942404   ⟹   XP_034798295
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21965,378,195 - 65,390,138 (+)NCBI
NHGRI_mPanPan11770,187,651 - 70,197,428 (+)NCBI
Mhudiblu_PPA_v01743,282,744 - 43,291,075 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034798295 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014914.1
  ENSPPAP00000014916.1
Reference Protein Sequences
RefSeq Acc Id: XP_034798295   ⟸   XM_034942404
- UniProtKB: A0A2R9ADC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000014916   ⟸   ENSPPAT00000037604
RefSeq Acc Id: ENSPPAP00000014914   ⟸   ENSPPAT00000037602
Protein Domains
Integrase catalytic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030623 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000037602.1 UniProtKB/TrEMBL
  ENSPPAT00000037604.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
InterPro Integrase_cat-core UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
NCBI Gene KRBA2 ENTREZGENE
PANTHER KRAB-A DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PROSITE INTEGRASE UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
UniProt A0A2R9AC99_PANPA UniProtKB/TrEMBL
  A0A2R9ADC4 ENTREZGENE, UniProtKB/TrEMBL