RTL8C (retrotransposon Gag like 8C) - Rat Genome Database

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Gene: RTL8C (retrotransposon Gag like 8C) Pan paniscus
Analyze
Symbol: RTL8C
Name: retrotransposon Gag like 8C
RGD ID: 11755309
Description: ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM127A; family with sequence similarity 127 member A; retrotransposon Gag-like protein 8B; retrotransposon Gag-like protein 8C; uncharacterized protein RTL8C
RGD Orthologs
Human
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X134,462,332 - 134,463,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X134,465,835 - 134,467,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X124,173,487 - 124,174,742 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X134,468,176 - 134,469,422 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
RTL8C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X134,462,332 - 134,463,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X134,465,835 - 134,467,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X124,173,487 - 124,174,742 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X134,468,176 - 134,469,422 (+)NCBIpanpan1.1PanPan1.1panPan2
RTL8C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X135,032,355 - 135,033,546 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX135,032,355 - 135,033,546 (+)EnsemblGRCh38hg38GRCh38
GRCh37X134,166,385 - 134,167,576 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,993,999 - 133,995,242 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X133,891,916 - 133,893,093NCBI
CeleraX134,553,154 - 134,554,397 (+)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX123,560,677 - 123,561,920 (+)NCBIHuRef
CHM1_1X134,077,715 - 134,078,958 (+)NCBICHM1_1
T2T-CHM13v2.0X133,357,722 - 133,358,913 (+)NCBIT2T-CHM13v2.0
LOC100518170
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X110,833,247 - 110,834,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X126,691,108 - 126,691,544 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTL8C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X110,238,182 - 110,239,429 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX110,238,255 - 110,238,852 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606547,845,145 - 47,846,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003814514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003814514   ⟹   XP_003814562
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X134,462,332 - 134,463,494 (+)NCBI
NHGRI_mPanPan1X134,465,835 - 134,467,090 (+)NCBI
Mhudiblu_PPA_v0X124,173,487 - 124,174,742 (+)NCBI
PanPan1.1X134,468,176 - 134,469,422 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003814562 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000036956.1
Reference Protein Sequences
RefSeq Acc Id: XP_003814562   ⟸   XM_003814514
- UniProtKB: A0A2R9C4U4 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
DUF4939


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041241 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059851.1 UniProtKB/TrEMBL
InterPro DUF4939 UniProtKB/TrEMBL
NCBI Gene FAM127A ENTREZGENE
Pfam DUF4939 UniProtKB/TrEMBL
UniProt A0A2R9C4U4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 RTL8C  retrotransposon Gag like 8C  FAM127A  family with sequence similarity 127 member A  Symbol and/or name change 5135510 APPROVED