FAM163B (family with sequence similarity 163 member B) - Rat Genome Database

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Gene: FAM163B (family with sequence similarity 163 member B) Pan paniscus
Analyze
Symbol: FAM163B
Name: family with sequence similarity 163 member B
RGD ID: 11754460
Description: ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2115,741,791 - 5,776,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan195,744,125 - 5,778,499 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,700,420 - 104,734,748 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19133,311,168 - 133,343,841 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,311,168 - 133,343,841 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
FAM163B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2115,741,791 - 5,776,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan195,744,125 - 5,778,499 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,700,420 - 104,734,748 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19133,311,168 - 133,343,841 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,311,168 - 133,343,841 (-)Ensemblpanpan1.1panPan2
FAM163B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,577,081 - 133,609,389 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,577,081 - 133,609,389 (-)EnsemblGRCh38hg38GRCh38
GRCh379136,442,203 - 136,474,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,433,965 - 135,435,166 (-)NCBINCBI36Build 36hg18NCBI36
Celera9106,991,068 - 106,992,269 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,943,556 - 105,945,387 (-)NCBIHuRef
CHM1_19136,593,007 - 136,594,838 (-)NCBICHM1_1
T2T-CHM13v2.09145,791,075 - 145,825,393 (-)NCBIT2T-CHM13v2.0
Fam163b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39227,000,391 - 27,032,489 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl227,000,392 - 27,032,503 (-)EnsemblGRCm39 Ensembl
GRCm38227,110,379 - 27,142,477 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl227,110,380 - 27,142,491 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,967,523 - 26,997,994 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,934,012 - 26,964,483 (-)NCBIMGSCv36mm8
Celera226,815,061 - 26,845,378 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.25NCBI
Fam163b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,834,145 - 30,865,802 (-)NCBIGRCr8
mRatBN7.2310,437,383 - 10,466,458 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,437,383 - 10,466,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx313,503,225 - 13,532,345 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0322,088,623 - 22,117,739 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,343,913 - 20,373,031 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,656,400 - 5,693,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl35,656,163 - 5,693,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0311,018,783 - 11,054,772 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.436,007,361 - 6,036,371 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera35,235,362 - 5,264,429 (-)NCBICelera
Cytogenetic Map3p12NCBI
Fam163b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,880,253 - 2,903,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,880,253 - 2,903,575 (-)NCBIChiLan1.0ChiLan1.0
FAM163B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,960,093 - 49,988,263 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,961,706 - 49,962,807 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,241,103 - 49,269,296 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,835,023 - 50,862,647 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,834,763 - 50,862,632 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,595,837 - 49,623,982 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,937,772 - 49,965,933 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0950,016,111 - 50,044,314 (-)NCBIUU_Cfam_GSD_1.0
Fam163b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947200,011,983 - 200,037,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366693,360,236 - 3,361,686 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366693,337,490 - 3,363,077 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM163B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1273,156,751 - 273,186,756 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11273,156,749 - 273,186,756 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21307,130,575 - 307,160,599 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM163B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,525,338 - 4,560,676 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,557,505 - 4,558,705 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666058428,478 - 464,163 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam163b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,978,293 - 2,001,410 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,978,667 - 2,002,131 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000051427   ⟹   ENSPPAP00000028580
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9133,311,168 - 133,343,841 (-)Ensembl
RefSeq Acc Id: XM_034929423   ⟹   XP_034785314
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2115,741,791 - 5,776,163 (+)NCBI
NHGRI_mPanPan195,744,125 - 5,778,499 (+)NCBI
Mhudiblu_PPA_v09104,700,420 - 104,734,748 (-)NCBI
RefSeq Acc Id: XM_057298611   ⟹   XP_057154594
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2115,742,865 - 5,776,163 (+)NCBI
NHGRI_mPanPan195,745,199 - 5,778,499 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034785314 (Get FASTA)   NCBI Sequence Viewer  
  XP_057154594 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028580.1
Reference Protein Sequences
RefSeq Acc Id: XP_034785314   ⟸   XM_034929423
- UniProtKB: A0A2R9BG15 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000028580   ⟸   ENSPPAT00000051427
RefSeq Acc Id: XP_057154594   ⟸   XM_057298611
- UniProtKB: A0A2R9BG15 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037328 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051427.1 UniProtKB/TrEMBL
InterPro FAM163 UniProtKB/TrEMBL
  FAM163B UniProtKB/TrEMBL
NCBI Gene FAM163B ENTREZGENE
PANTHER PROTEIN FAM163B UniProtKB/TrEMBL
  PTHR31396 UniProtKB/TrEMBL
Pfam FAM163 UniProtKB/TrEMBL
UniProt A0A2R9BG15 ENTREZGENE, UniProtKB/TrEMBL