LOC100972584 (olfactory receptor 2T11) - Rat Genome Database

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Pathways
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Gene: LOC100972584 (olfactory receptor 2T11) Pan paniscus
Analyze
Symbol: LOC100972584 (Ensembl: OR2T11)
Name: olfactory receptor 2T11 (Ensembl:olfactory receptor family 2 subfamily T member 11)
RGD ID: 11753419
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21380,913 - 392,469 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11651,346 - 662,903 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,299,249 - 224,300,308 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,611,923 - 229,612,982 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1229,611,979 - 229,612,929 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100972584
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21380,913 - 392,469 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11651,346 - 662,903 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,299,249 - 224,300,308 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,611,923 - 229,612,982 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1229,611,979 - 229,612,929 (+)Ensemblpanpan1.1panPan2
OR2T11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,623,557 - 248,635,091 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,623,557 - 248,635,091 (-)EnsemblGRCh38hg38GRCh38
GRCh371248,786,858 - 248,798,392 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,856,102 - 246,857,052 (-)NCBINCBI36Build 36hg18NCBI36
Build 341245,115,519 - 245,116,470NCBI
Celera1222,088,603 - 222,089,553 (-)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1219,164,753 - 219,165,703 (-)NCBIHuRef
CHM1_11250,061,909 - 250,062,859 (-)NCBICHM1_1
T2T-CHM13v2.01248,062,202 - 248,073,708 (-)NCBIT2T-CHM13v2.0
OR2T11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,695,311 - 2,696,273 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl142,695,311 - 2,696,273 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha142,345,513 - 2,346,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0142,428,100 - 2,429,062 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl142,428,100 - 2,429,062 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1142,573,331 - 2,574,293 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0142,372,315 - 2,373,277 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0142,170,392 - 2,171,354 (-)NCBIUU_Cfam_GSD_1.0
LOC100624524
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1252,987,210 - 52,988,163 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22161,685,648 - 161,686,601 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_057300749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000001271   ⟹   ENSPPAP00000000362
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1229,611,979 - 229,612,929 (+)Ensembl
RefSeq Acc Id: XM_057300749   ⟹   XP_057156732
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21380,913 - 392,469 (+)NCBI
NHGRI_mPanPan11651,346 - 662,903 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057156732 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000362.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000000362   ⟸   ENSPPAT00000001271
RefSeq Acc Id: XP_057156732   ⟸   XM_057300749
- UniProtKB: A0A2R8Z6F5 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000001140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000001271.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report pps:100972584 UniProtKB/TrEMBL
NCBI Gene LOC100972584 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 2T11 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R8Z6F5 ENTREZGENE, UniProtKB/TrEMBL