HOOK3 (hook microtubule tethering protein 3) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: HOOK3 (hook microtubule tethering protein 3) Pan paniscus
Analyze
Symbol: HOOK3
Name: hook microtubule tethering protein 3
RGD ID: 11752797
Description: ENCODES a protein that exhibits dynactin binding (ortholog); dynein intermediate chain binding (ortholog); dynein light chain binding (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); early endosome to late endosome transport (ortholog); endosome organization (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); Dwarfism (ortholog); Idiopathic Basal Ganglia Calcification 1 (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cis-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: hook homolog 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,589,942 - 39,720,341 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,595,762 - 39,711,043 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,145,427 - 42,278,727 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
HOOK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,589,942 - 39,720,341 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,595,762 - 39,711,043 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,145,427 - 42,278,727 (+)NCBIMhudiblu_PPA_v0panPan3
HOOK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl842,896,946 - 43,030,535 (+)EnsemblGRCh38hg38GRCh38
GRCh38842,896,978 - 43,030,535 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37842,752,121 - 42,885,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,871,190 - 42,994,084 (+)NCBINCBI36hg18NCBI36
Build 34842,871,189 - 42,994,084NCBI
Celera841,700,858 - 41,834,504 (+)NCBI
Cytogenetic Map8p11.21NCBI
HuRef841,275,201 - 41,408,559 (+)NCBIHuRef
CHM1_1842,798,954 - 42,932,603 (+)NCBICHM1_1
Hook3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,511,449 - 26,609,646 (-)NCBIGRCm39mm39
GRCm39 Ensembl826,511,449 - 26,609,252 (-)Ensembl
GRCm38826,021,421 - 26,119,618 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl826,021,421 - 26,119,224 (-)EnsemblGRCm38mm10GRCm38
MGSCv37827,131,893 - 27,229,696 (-)NCBIGRCm37mm9NCBIm37
MGSCv36827,497,435 - 27,584,559 (-)NCBImm8
Celera827,491,977 - 27,589,321 (-)NCBICelera
Cytogenetic Map8A2NCBI
Hook3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21665,954,293 - 66,058,812 (+)NCBI
Rnor_6.01670,710,347 - 70,818,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01670,376,538 - 70,483,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,338,144 - 70,424,173 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1663,865,670 - 63,960,092 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
Hook3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,149,013 - 13,249,321 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,149,013 - 13,249,524 (+)NCBIChiLan1.0ChiLan1.0
HOOK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1622,784,267 - 22,901,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11622,791,198 - 22,940,168 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Hook3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004937108873 - 110,949 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOOK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,817,987 - 11,924,884 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,817,963 - 11,919,152 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HOOK3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,897,108 - 41,023,068 (+)NCBI
ChlSab1.1 Ensembl840,897,209 - 41,021,808 (+)Ensembl
Hook3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624780127,718 - 237,701 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055202   ⟹   ENSPPAP00000032335
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl839,595,762 - 39,708,437 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000055207   ⟹   ENSPPAP00000032340
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl839,597,485 - 39,708,437 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000055215   ⟹   ENSPPAP00000032348
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl839,597,737 - 39,711,043 (+)Ensembl
RefSeq Acc Id: XM_008976896   ⟹   XP_008975144
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1839,589,942 - 39,720,341 (+)NCBI
Mhudiblu_PPA_v0842,146,668 - 42,277,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034966028   ⟹   XP_034821919
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0842,145,429 - 42,277,453 (+)NCBI
RefSeq Acc Id: XM_034966029   ⟹   XP_034821920
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0842,145,428 - 42,277,453 (+)NCBI
RefSeq Acc Id: XM_034966030   ⟹   XP_034821921
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0842,145,429 - 42,278,727 (+)NCBI
RefSeq Acc Id: XM_034966031   ⟹   XP_034821922
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0842,145,429 - 42,278,727 (+)NCBI
RefSeq Acc Id: XM_034966032   ⟹   XP_034821923
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0842,145,427 - 42,277,453 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_008975144   ⟸   XM_008976896
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034821923   ⟸   XM_034966032
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034821920   ⟸   XM_034966029
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034821921   ⟸   XM_034966030
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034821922   ⟸   XM_034966031
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034821919   ⟸   XM_034966028
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000032340   ⟸   ENSPPAT00000055207
RefSeq Acc Id: ENSPPAP00000032335   ⟸   ENSPPAT00000055202
RefSeq Acc Id: ENSPPAP00000032348   ⟸   ENSPPAT00000055215
Protein Domains
Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038995 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000032335 UniProtKB/TrEMBL
  ENSPPAP00000032340 UniProtKB/TrEMBL
  ENSPPAP00000032348 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055202 UniProtKB/TrEMBL
  ENSPPAT00000055207 UniProtKB/TrEMBL
  ENSPPAT00000055215 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  Hook-like_fam UniProtKB/TrEMBL
  HOOK_N UniProtKB/TrEMBL
NCBI Gene HOOK3 ENTREZGENE
Pfam HOOK UniProtKB/TrEMBL
  HOOK_N UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
UniProt A0A2R9BRP1_PANPA UniProtKB/TrEMBL
  A0A2R9BV54_PANPA UniProtKB/TrEMBL
  A0A2R9BV58_PANPA UniProtKB/TrEMBL