PMS1 (PMS1 homolog 1, mismatch repair system component) - Rat Genome Database

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Gene: PMS1 (PMS1 homolog 1, mismatch repair system component) Pan paniscus
Analyze
Symbol: PMS1
Name: PMS1 homolog 1, mismatch repair system component
RGD ID: 11750438
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATP-dependent DNA damage sensor activity (inferred); INVOLVED IN mismatch repair (ortholog); response to xenobiotic stimulus (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; ASSOCIATED WITH breast cancer (ortholog); Colonic Polyps (ortholog); colorectal cancer (ortholog); FOUND IN mismatch repair complex (inferred); MutLalpha complex (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PMS1 postmeiotic segregation increased 1; PMS1 protein homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21392,475,954 - 92,566,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B92,490,937 - 92,581,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B77,090,215 - 77,180,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B195,010,233 - 195,100,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B195,010,233 - 195,100,492 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21392,475,954 - 92,566,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B92,490,937 - 92,581,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B77,090,215 - 77,180,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B195,010,233 - 195,100,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B195,010,233 - 195,100,492 (+)Ensemblpanpan1.1panPan2
PMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382189,784,450 - 189,877,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2189,784,085 - 189,877,629 (+)EnsemblGRCh38hg38GRCh38
GRCh372190,649,176 - 190,742,355 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362190,357,355 - 190,450,600 (+)NCBINCBI36Build 36hg18NCBI36
Build 342190,474,615 - 190,567,860NCBI
Celera2184,243,739 - 184,337,288 (+)NCBICelera
Cytogenetic Map2q32.2NCBI
HuRef2182,508,462 - 182,602,272 (+)NCBIHuRef
CHM1_12190,654,694 - 190,748,309 (+)NCBICHM1_1
T2T-CHM13v2.02190,273,733 - 190,366,996 (+)NCBIT2T-CHM13v2.0
Pms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,225,794 - 53,336,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,228,346 - 53,336,177 (-)EnsemblGRCm39 Ensembl
GRCm38153,189,187 - 53,297,031 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,189,187 - 53,297,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37153,246,031 - 53,353,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,133,732 - 53,241,541 (-)NCBIMGSCv36mm8
Celera153,728,483 - 53,836,401 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
Pms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8955,721,393 - 55,832,225 (+)NCBIGRCr8
mRatBN7.2948,229,403 - 48,340,237 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl948,253,410 - 48,340,237 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx956,789,682 - 56,875,049 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0961,912,501 - 61,997,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,208,491 - 60,293,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0953,120,656 - 53,206,520 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,120,656 - 53,206,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0952,784,772 - 52,871,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4945,203,344 - 45,292,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1945,204,757 - 45,294,034 (+)NCBI
Celera945,919,538 - 46,005,758 (+)NCBICelera
Cytogenetic Map9q22NCBI
Pms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554039,022,078 - 9,100,442 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554039,021,488 - 9,100,442 (-)NCBIChiLan1.0ChiLan1.0
PMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.137502,752 - 609,640 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl37502,747 - 790,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha371,475,758 - 1,583,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.037395,761 - 503,686 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl37395,722 - 503,685 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.137406,588 - 513,890 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.037375,065 - 482,126 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.037403,027 - 510,344 (+)NCBIUU_Cfam_GSD_1.0
Pms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303148,621,339 - 148,718,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365068,119,494 - 8,197,768 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365068,118,816 - 8,197,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1594,351,630 - 94,476,506 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11594,351,603 - 94,476,505 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215105,412,685 - 105,513,299 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11075,305,129 - 75,392,193 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1075,311,887 - 75,392,590 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040124,084,971 - 124,175,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003825270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003825271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008950588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008950589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008950590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014344033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014344034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014344035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024928036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034954671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055108874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055108875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055108876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057301455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057301456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057301457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063595489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010109526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000013794   ⟹   ENSPPAP00000002955
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,010,233 - 195,100,492 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013835   ⟹   ENSPPAP00000002961
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,010,233 - 195,100,492 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013846   ⟹   ENSPPAP00000002964
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,017,908 - 195,100,299 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013847   ⟹   ENSPPAP00000002965
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,017,908 - 195,100,299 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013852   ⟹   ENSPPAP00000002970
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,017,908 - 195,096,392 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013855   ⟹   ENSPPAP00000002973
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,017,908 - 195,032,718 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013894   ⟹   ENSPPAP00000002978
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,017,908 - 195,031,982 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000013904   ⟹   ENSPPAP00000002980
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B195,061,906 - 195,090,835 (+)Ensembl
RefSeq Acc Id: XM_003825270   ⟹   XP_003825318
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,483 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,642 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,575 - 77,180,724 (+)NCBI
PanPan1.12B195,010,233 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003825271   ⟹   XP_003825319
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,634 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,575 - 77,180,724 (+)NCBI
PanPan1.12B195,010,233 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008950588   ⟹   XP_008948836
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,654 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,637 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,628 - 77,180,724 (+)NCBI
PanPan1.12B195,010,652 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008950589   ⟹   XP_008948837
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,467 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,633 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,566 - 77,180,724 (+)NCBI
PanPan1.12B195,010,617 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008950590   ⟹   XP_008948838
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,475,954 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,490,937 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,533 - 77,180,724 (+)NCBI
PanPan1.12B195,010,600 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014344033   ⟹   XP_014199519
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,662 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,575 - 77,180,724 (+)NCBI
PanPan1.12B195,010,233 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014344034   ⟹   XP_014199520
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,743 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,744 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,756 - 77,180,724 (+)NCBI
PanPan1.12B195,010,634 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014344035   ⟹   XP_014199521
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,467 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,633 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,566 - 77,180,724 (+)NCBI
PanPan1.12B195,010,233 - 195,100,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034954659   ⟹   XP_034810550
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,662 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,682 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,615 - 77,180,724 (+)NCBI
RefSeq Acc Id: XM_034954660   ⟹   XP_034810551
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,658 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,778 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,580 - 77,180,724 (+)NCBI
RefSeq Acc Id: XM_034954661   ⟹   XP_034810552
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,662 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,090,578 - 77,180,724 (+)NCBI
RefSeq Acc Id: XM_034954668   ⟹   XP_034810559
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,504,780 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,515,831 - 92,581,763 (+)NCBI
Mhudiblu_PPA_v02B77,118,455 - 77,180,724 (+)NCBI
RefSeq Acc Id: XM_034954671   ⟹   XP_034810562
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,662 - 92,499,339 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,514,322 (+)NCBI
Mhudiblu_PPA_v02B77,090,578 - 77,112,706 (+)NCBI
RefSeq Acc Id: XM_055108874   ⟹   XP_054964849
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,739 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,722 - 92,581,763 (+)NCBI
RefSeq Acc Id: XM_055108875   ⟹   XP_054964850
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,634 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,581,763 (+)NCBI
RefSeq Acc Id: XM_055108876   ⟹   XP_054964851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,487,972 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,502,955 - 92,581,763 (+)NCBI
RefSeq Acc Id: XM_057301455   ⟹   XP_057157438
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,483 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,581,763 (+)NCBI
RefSeq Acc Id: XM_057301456   ⟹   XP_057157439
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,634 - 92,566,780 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,581,763 (+)NCBI
RefSeq Acc Id: XM_057301457   ⟹   XP_057157440
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,662 - 92,499,339 (+)NCBI
NHGRI_mPanPan12B92,491,645 - 92,514,322 (+)NCBI
RefSeq Acc Id: XM_063595477   ⟹   XP_063451547
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,709 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595478   ⟹   XP_063451548
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,467 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595479   ⟹   XP_063451549
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,281 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595480   ⟹   XP_063451550
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,799 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595481   ⟹   XP_063451551
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,662 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595482   ⟹   XP_063451552
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,483 - 92,562,796 (+)NCBI
RefSeq Acc Id: XM_063595483   ⟹   XP_063451553
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,662 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595484   ⟹   XP_063451554
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,467 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595485   ⟹   XP_063451555
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,475,954 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595486   ⟹   XP_063451556
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,513,416 - 92,566,780 (+)NCBI
RefSeq Acc Id: XM_063595487   ⟹   XP_063451557
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,714 - 92,499,339 (+)NCBI
RefSeq Acc Id: XM_063595488   ⟹   XP_063451558
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,467 - 92,499,339 (+)NCBI
RefSeq Acc Id: XM_063595489   ⟹   XP_063451559
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,475,954 - 92,499,339 (+)NCBI
RefSeq Acc Id: XR_010109526
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21392,476,483 - 92,562,780 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003825318 (Get FASTA)   NCBI Sequence Viewer  
  XP_003825319 (Get FASTA)   NCBI Sequence Viewer  
  XP_008948836 (Get FASTA)   NCBI Sequence Viewer  
  XP_008948837 (Get FASTA)   NCBI Sequence Viewer  
  XP_008948838 (Get FASTA)   NCBI Sequence Viewer  
  XP_014199519 (Get FASTA)   NCBI Sequence Viewer  
  XP_014199520 (Get FASTA)   NCBI Sequence Viewer  
  XP_014199521 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810550 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810551 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810552 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810559 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810562 (Get FASTA)   NCBI Sequence Viewer  
  XP_054964849 (Get FASTA)   NCBI Sequence Viewer  
  XP_054964850 (Get FASTA)   NCBI Sequence Viewer  
  XP_054964851 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157438 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157439 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157440 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451547 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451548 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451549 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451550 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451551 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451552 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451553 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451554 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451555 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451556 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451557 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451558 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451559 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002955.1
  ENSPPAP00000002961.1
  ENSPPAP00000002964.1
  ENSPPAP00000002965.1
  ENSPPAP00000002970.1
  ENSPPAP00000002973.1
  ENSPPAP00000002978.1
  ENSPPAP00000002980.1
RefSeq Acc Id: XP_003825318   ⟸   XM_003825270
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003825319   ⟸   XM_003825271
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008948838   ⟸   XM_008950590
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008948837   ⟸   XM_008950589
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014199521   ⟸   XM_014344035
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014199520   ⟸   XM_014344034
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014199519   ⟸   XM_014344033
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008948836   ⟸   XM_008950588
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034810552   ⟸   XM_034954661
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034810562   ⟸   XM_034954671
- Peptide Label: isoform X9
- UniProtKB: A0A2R8ZDJ9 (UniProtKB/TrEMBL),   A0A2R8ZDK5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034810551   ⟸   XM_034954660
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034810550   ⟸   XM_034954659
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034810559   ⟸   XM_034954668
- Peptide Label: isoform X6
- UniProtKB: A0A2R8ZJU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000002955   ⟸   ENSPPAT00000013794
RefSeq Acc Id: ENSPPAP00000002973   ⟸   ENSPPAT00000013855
RefSeq Acc Id: ENSPPAP00000002970   ⟸   ENSPPAT00000013852
RefSeq Acc Id: ENSPPAP00000002961   ⟸   ENSPPAT00000013835
RefSeq Acc Id: ENSPPAP00000002965   ⟸   ENSPPAT00000013847
RefSeq Acc Id: ENSPPAP00000002964   ⟸   ENSPPAT00000013846
RefSeq Acc Id: ENSPPAP00000002978   ⟸   ENSPPAT00000013894
RefSeq Acc Id: ENSPPAP00000002980   ⟸   ENSPPAT00000013904
RefSeq Acc Id: XP_054964850   ⟸   XM_055108875
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054964849   ⟸   XM_055108874
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054964851   ⟸   XM_055108876
- Peptide Label: isoform X6
- UniProtKB: A0A2R8ZJU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157438   ⟸   XM_057301455
- Peptide Label: isoform X5
RefSeq Acc Id: XP_057157439   ⟸   XM_057301456
- Peptide Label: isoform X8
- UniProtKB: A0A2R8ZJT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157440   ⟸   XM_057301457
- Peptide Label: isoform X9
- UniProtKB: A0A2R8ZDJ9 (UniProtKB/TrEMBL),   A0A2R8ZDK5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063451555   ⟸   XM_063595485
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063451559   ⟸   XM_063595489
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063451549   ⟸   XM_063595479
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063451554   ⟸   XM_063595484
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063451548   ⟸   XM_063595478
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063451558   ⟸   XM_063595488
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063451552   ⟸   XM_063595482
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063451553   ⟸   XM_063595483
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063451551   ⟸   XM_063595481
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063451547   ⟸   XM_063595477
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063451557   ⟸   XM_063595487
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063451550   ⟸   XM_063595480
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063451556   ⟸   XM_063595486
- Peptide Label: isoform X7
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000012384 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000013794.1 UniProtKB/TrEMBL
  ENSPPAT00000013835.1 UniProtKB/TrEMBL
  ENSPPAT00000013846.1 UniProtKB/TrEMBL
  ENSPPAT00000013847.1 UniProtKB/TrEMBL
  ENSPPAT00000013852.1 UniProtKB/TrEMBL
  ENSPPAT00000013855.1 UniProtKB/TrEMBL
  ENSPPAT00000013894.1 UniProtKB/TrEMBL
  ENSPPAT00000013904.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/TrEMBL
InterPro DNA_mismatch_repair_CS UniProtKB/TrEMBL
  DNA_mismatch_repair_N UniProtKB/TrEMBL
  DNA_mismatch_S5_2-like UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  MutL/Mlh/Pms UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
KEGG Report pps:100994682 UniProtKB/TrEMBL
NCBI Gene PMS1 ENTREZGENE
PANTHER PMS1 PROTEIN HOMOLOG 1 UniProtKB/TrEMBL
  PTHR10073 UniProtKB/TrEMBL
Pfam DNA_mis_repair UniProtKB/TrEMBL
  HATPase_c_3 UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PROSITE DNA_MISMATCH_REPAIR_1 UniProtKB/TrEMBL
  HMG_BOX_2 UniProtKB/TrEMBL
SMART DNA_mis_repair UniProtKB/TrEMBL
  HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
  SSF55874 UniProtKB/TrEMBL
UniProt A0A2R8ZD19_PANPA UniProtKB/TrEMBL
  A0A2R8ZD31_PANPA UniProtKB/TrEMBL
  A0A2R8ZD34_PANPA UniProtKB/TrEMBL
  A0A2R8ZDJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZDK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZJT1_PANPA UniProtKB/TrEMBL
  A0A2R8ZJT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZJU3 ENTREZGENE, UniProtKB/TrEMBL