AMT (aminomethyltransferase) - Rat Genome Database

Name: AMT
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: AMT (aminomethyltransferase) Pan paniscus

Analyze

Symbol:

AMT

Name:

aminomethyltransferase

RGD ID:

11750219

Description:

ENCODES a protein that exhibits aminomethyltransferase activity (ortholog); INVOLVED IN glycine decarboxylation via glycine cleavage system (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; folate cycle metabolic pathway; ASSOCIATED WITH Acidoses (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); epilepsy (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

aminomethyltransferase, mitochondrial

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AMT (aminomethyltransferase)	NCBI	Ortholog
Mus musculus (house mouse):	Amt (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Amt (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Amt (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AMT (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Amt (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AMT (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	AMT (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Amt (aminomethyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	50,589,193 - 50,594,968 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,589,193 - 50,594,968 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	49,344,590 - 49,350,383 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acidoses (ISO)

autosomal recessive limb-girdle muscular dystrophy type 2P (ISO)

epilepsy (ISO)

genetic disease (ISO)

glycine encephalopathy (ISO)

visual epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycine decarboxylation via glycine cleavage system (ISO)

Cellular Component

mitochondrion (ISO)

nucleoplasm (ISO)

Molecular Function

aminomethyltransferase activity (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

dihydropyrimidine dehydrogenase deficiency pathway (ISO)

dimethylglycine dehydrogenase deficiency pathway (ISO)

folate cycle metabolic pathway (ISO)

nonketotic hyperglycinemia pathway (ISO)

sarcosinemia pathway (ISO)

References

Genomics

Comparative Map Data

AMT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	50,589,193 - 50,594,968 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,589,193 - 50,594,968 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	49,344,590 - 49,350,383 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

AMT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	49,416,775 - 49,422,753 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	3	49,416,778 - 49,422,685 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	49,416,778 - 49,422,473 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	49,454,211 - 49,459,906 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,429,215 - 49,435,016 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	49,429,215 - 49,435,016	NCBI
Celera	3	49,418,998 - 49,424,898 (-)	NCBI
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,513,933 - 49,519,839 (-)	NCBI		HuRef
CHM1_1	3	49,406,978 - 49,412,879 (-)	NCBI		CHM1_1

Amt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,174,104 - 108,179,501 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	108,174,052 - 108,179,501 (+)	Ensembl
GRCm38	9	108,296,905 - 108,302,302 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,296,853 - 108,302,302 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,199,253 - 108,203,928 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	108,155,015 - 108,159,690 (+)	NCBI			mm8
Celera	9	107,905,964 - 107,910,640 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI

Amt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	108,981,620 - 108,988,127 (+)	NCBI
Rnor_6.0 Ensembl	8	117,068,582 - 117,077,913 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	117,068,388 - 117,078,633 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	116,421,237 - 116,427,437 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	8	108,284,894 - 108,291,149 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Amt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,351,743 - 1,358,220 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,351,743 - 1,358,220 (-)	NCBI	ChiLan1.0	ChiLan1.0

AMT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	39,815,814 - 39,820,506 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	39,815,449 - 39,820,907 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Amt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936529	1,049,364 - 1,054,458 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AMT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,995,595 - 32,002,470 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,995,600 - 32,002,514 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

AMT
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,813,601 - 10,820,628 (-)	NCBI
ChlSab1.1 Ensembl	22	10,814,358 - 10,819,632 (-)	Ensembl

Amt
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	3,366,023 - 3,372,266 (-)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003818859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008972268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000055273 ⟹ ENSPPAP00000032405

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,193 - 50,594,968 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055275 ⟹ ENSPPAP00000032407

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,193 - 50,594,968 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055291 ⟹ ENSPPAP00000032423

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,759 - 50,594,740 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055303 ⟹ ENSPPAP00000032435

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,955 - 50,594,740 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055306 ⟹ ENSPPAP00000032438

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,955 - 50,594,740 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055310 ⟹ ENSPPAP00000032442

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,955 - 50,594,740 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055312 ⟹ ENSPPAP00000032444

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,955 - 50,594,740 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055313 ⟹ ENSPPAP00000032445

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,589,955 - 50,594,740 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000055315 ⟹ ENSPPAP00000032447

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,591,311 - 50,594,740 (-)	Ensembl

RefSeq Acc Id:

XM_003818858 ⟹ XP_003818906

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	3	50,589,193 - 50,594,968 (-)	NCBI
Mhudiblu_PPA_v0	3	49,344,590 - 49,350,383 (-)	NCBI

Sequence:

show sequence

GAGCTGCCCTGAAGAGTCAGCCGAAAGAGCCGGAGGCTGCTTCCCTGTGGTTGCGGGTTCCTGC
ATTCTCTGCTCTAAATCCCAGCCTGCCCTTGGGGCTGCCCACGCCCCCTTCAGATCCTTTGCTC
CGGAGAGAGACCTGTCCGAGCAGAGGCCTGGACTACATCTCCCGGCGTGCCTGGCAGTGTGGTG
GCCTCTGTGCGCCGTCTGCACTCGTTGCAGGCGACGATGCAGAGGGCTGTAAGTGTGGTGGCCC
GTCTGGGCTTTCGCCTGCAGGCAATCCCCCCGGCCTTGTGTCATCCACTTAGTTGCGCACAGGA
GGTGCTCCGCAGGACACCGCTCTATGACTTCCACCTGGCCCACGGCGGGAAAATGGTGGCGTTT
GCGGGTTGGAGTCTGCCAGTGCAGTACCGGGACAGTCACACTGACTCGCACCTGCACACACGCC
AGCACTGCTCGCTCTTTGACGTGTCTCATATGCTGCAGACCAAGATACTTGGTAGTGACCGGGT
GAAGCTGATGGAGAGTCTAGTGGTTGGAGACATTGCAGAGCTAAGACCAAACCAGGGGACACTG
TCGCTGTTTACCAACGAGGCTGGAGGCATCTTAGATGACTTGATTGTAACCAATACTTCTGAGG
GCCACCTGTATGTGGTGTCCAACGCTGGCTGCTGGGAGAAAGATTTGGCCCTCATGCAGGACAA
GGTCAGGGAGCTTCAGAACCAGGGCAGAGATGTGGGCCTGGAGGTGTTGGATAATGCCCTGCTA
GCTCTGCAAGGCCCCACTGCAGCCCAGGTACTACAGGCCGGCGTGGCAGATGACCTGAGGAAAC
TGCCCTTCATGACCAGTGCTGTGATGGAGGTGTTTGGCGTGTCTGGCTGCCGCGTGACCCGCTG
TGGCTACACAGGAGAGGATGGTGTGGAGATCTCGGTGCCGGTAGCGGGGGCAGTTCACCTGGCA
ACAGCTCTTCTGAAAAACCCAGAGGTGAAGCTGGCAGGGCTGGCAGCCAGGGACAGCCTGCGCC
TGGAGGCAGGCCTCTGCCTGTATGGGAATGACATTGATGAACACACTACACCTGTGGAGGGCAG
CCTCAGTTGGACACTGGGGAAGCGCCGCCGAGCTGCTATGGACTTCCCTGGAGCCAAGGTCATT
GTTCCCCAGCTGAAGGGCAAGGTGCAGCGGAGGCGTGTGGGATTGATGTGTGAGGGGGCCCCCA
TGCGGGCACACAGTCCCATCCTGAACATGGAGGGTACCAAGATTGGTACTGTGACTAGTGGCTG
CCCCTCCCCCTCTCTGAAGAAGAATGTGGCGATGGGTTATGTGCCCTGCGAGTACAGTCGTCCT
GGGACAATGCTGCTGGTAGAGGTGCGGCGGAAGCAGCAGATGGCTGTAGTCAGCAAGATGCCCT
TTGTGCCCACAAACTACTATACCCTCAAGTGAAGCTGGCTCAGGATGGGGCTGTCCCTTCCAGG
AGTTTTGCCCCTACAAGGGGTTAGTCAAGAAGCTGAGGCAGAACTCACTGGGGGTGGGCAGTTA
AGGTGGAGGCTGATTCTAATTGTCTGGTTGAGGGGCCACACCACCTATTCCCCCCACCTAACTC
ATGCCATTCCAGCTTCCTTCAGGACCCTGCTTCTGAGTGACGGACCAGCTCACACAATGTCTTG
TTTCAGTCCATGATCCCACTGACCTACTCTTGCCTGCTGAAGGGTAATGAGAAGCTTTGGTTCT
GCCATCTCTCCCACTCTGCCAGGTGCTGGCTGTGGAGCAAAGGCTCACCTTTGTGGGGAGGATA
AAACCTGCCCAACCTACCTCACCATGGTTTTTCACATTGCAAAGGGTAATAACATGGGCAGTGC
GGACTTAGGCTACCCCCTCCAGTTTGCTTTCCGTAAATGCAAATTGTCCCTACTGCAAGTCAGG
AATGATTGCTGACTCACAGTAGGGCTGCTATGCCTGTGTGTAAACTTGGGGATGGCTGAGGGAA
CATAGACTCACTCTTCCACATTCCCAAGTTGGTCTAGTGTGCTGCCCAGTAGCAAACCATGGCA
GGCTCACCACCTATTCTGAGCTCCAGGGCTGCTGTAGGGCAGGGTGGGCTTCCTCCCAGACTTG
CCTTACCCTGGGCTGATCTTTGCCCCTGGTATGCATTAATGGACTCCACTGAATCCTGAAAAAA
AAATTAAACTTCCTTCTTACTTGCCA

hide sequence

RefSeq Acc Id:

XM_003818859 ⟹ XP_003818907

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	3	50,589,193 - 50,594,968 (-)	NCBI
Mhudiblu_PPA_v0	3	49,344,590 - 49,350,277 (-)	NCBI

Sequence:

show sequence

GAGCTGCCCTGAAGAGTCAGCCGAAAGAGCCGGAGGCTGCTTCCCTGTGGTTGCGGGTTCCTGC
ATTCTCTGCTCTAAATCCCAGCCTGCCCTTGGGGCTGCCCACGCCCCCTTCAGATCCTTTGCTC
CGGAGAGAGACCTGTCCGAGCAGAGGCCTGGACTACATCTCCCGGCGTGCCTGGCAGTGTGGTG
GCCTCTGTGCGCCGTCTGCACTCGTTGCAGGCGACGATGCAGAGGGCTGTAAGTGTGGTGGCCC
GTCTGGGCTTTCGCCTGCAGGCAATCCCCCCGGCCTTGTGTCATCCACTTAGTTGCGCACAGAC
CAAGATACTTGGTAGTGACCGGGTGAAGCTGATGGAGAGTCTAGTGGTTGGAGACATTGCAGAG
CTAAGACCAAACCAGGGGACACTGTCGCTGTTTACCAACGAGGCTGGAGGCATCTTAGATGACT
TGATTGTAACCAATACTTCTGAGGGCCACCTGTATGTGGTGTCCAACGCTGGCTGCTGGGAGAA
AGATTTGGCCCTCATGCAGGACAAGGTCAGGGAGCTTCAGAACCAGGGCAGAGATGTGGGCCTG
GAGGTGTTGGATAATGCCCTGCTAGCTCTGCAAGGCCCCACTGCAGCCCAGGTACTACAGGCCG
GCGTGGCAGATGACCTGAGGAAACTGCCCTTCATGACCAGTGCTGTGATGGAGGTGTTTGGCGT
GTCTGGCTGCCGCGTGACCCGCTGTGGCTACACAGGAGAGGATGGTGTGGAGATCTCGGTGCCG
GTAGCGGGGGCAGTTCACCTGGCAACAGCTCTTCTGAAAAACCCAGAGGTGAAGCTGGCAGGGC
TGGCAGCCAGGGACAGCCTGCGCCTGGAGGCAGGCCTCTGCCTGTATGGGAATGACATTGATGA
ACACACTACACCTGTGGAGGGCAGCCTCAGTTGGACACTGGGGAAGCGCCGCCGAGCTGCTATG
GACTTCCCTGGAGCCAAGGTCATTGTTCCCCAGCTGAAGGGCAAGGTGCAGCGGAGGCGTGTGG
GATTGATGTGTGAGGGGGCCCCCATGCGGGCACACAGTCCCATCCTGAACATGGAGGGTACCAA
GATTGGTACTGTGACTAGTGGCTGCCCCTCCCCCTCTCTGAAGAAGAATGTGGCGATGGGTTAT
GTGCCCTGCGAGTACAGTCGTCCTGGGACAATGCTGCTGGTAGAGGTGCGGCGGAAGCAGCAGA
TGGCTGTAGTCAGCAAGATGCCCTTTGTGCCCACAAACTACTATACCCTCAAGTGAAGCTGGCT
CAGGATGGGGCTGTCCCTTCCAGGAGTTTTGCCCCTACAAGGGGTTAGTCAAGAAGCTGAGGCA
GAACTCACTGGGGGTGGGCAGTTAAGGTGGAGGCTGATTCTAATTGTCTGGTTGAGGGGCCACA
CCACCTATTCCCCCCACCTAACTCATGCCATTCCAGCTTCCTTCAGGACCCTGCTTCTGAGTGA
CGGACCAGCTCACACAATGTCTTGTTTCAGTCCATGATCCCACTGACCTACTCTTGCCTGCTGA
AGGGTAATGAGAAGCTTTGGTTCTGCCATCTCTCCCACTCTGCCAGGTGCTGGCTGTGGAGCAA
AGGCTCACCTTTGTGGGGAGGATAAAACCTGCCCAACCTACCTCACCATGGTTTTTCACATTGC
AAAGGGTAATAACATGGGCAGTGCGGACTTAGGCTACCCCCTCCAGTTTGCTTTCCGTAAATGC
AAATTGTCCCTACTGCAAGTCAGGAATGATTGCTGACTCACAGTAGGGCTGCTATGCCTGTGTG
TAAACTTGGGGATGGCTGAGGGAACATAGACTCACTCTTCCACATTCCCAAGTTGGTCTAGTGT
GCTGCCCAGTAGCAAACCATGGCAGGCTCACCACCTATTCTGAGCTCCAGGGCTGCTGTAGGGC
AGGGTGGGCTTCCTCCCAGACTTGCCTTACCCTGGGCTGATCTTTGCCCCTGGTATGCATTAAT
GGACTCCACTGAATCCTGAAAAAAAAATTAAACTTCCTTCTTACTTGCCA

hide sequence

RefSeq Acc Id:

XM_008972268 ⟹ XP_008970516

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	3	50,589,193 - 50,594,968 (-)	NCBI
Mhudiblu_PPA_v0	3	49,344,590 - 49,350,339 (-)	NCBI

Sequence:

show sequence

GAGCTGCCCTGAAGAGTCAGCCGAAAGAGCCGGAGGCTGCTTCCCTGTGGTTGCGGGTTCCTGC
ATTCTCTGCTCTAAATCCCAGCCTGCCCTTGGGGCTGCCCACGCCCCCTTCAGATCCTTTGCTC
CGGAGAGAGACCTGTCCGAGCAGAGGCCTGGACTACATCTCCCGGCGTGCCTGGCAGTGTGGTG
GCCTCTGTGCGCCGTCTGCACTCGTTGCAGGCGACGATGCAGAGGGCTGTAAGTGTGGTGGCCC
GTCTGGGCTTTCGCCTGCAGGCAATCCCCCCGGCCTTGTGTCATCCACTTAGTTGCGCACAGGA
CACCGCTCTATGACTTCCACCTGGCCCACGGCGGGAAAATGGTGGCGTTTGCGGGTTGGAGTCT
GCCAGTGCAGTACCGGGACAGTCACACTGACTCGCACCTGCACACACGCCAGCACTGCTCGCTC
TTTGACGTGTCTCATATGCTGCAGACCAAGATACTTGGTAGTGACCGGGTGAAGCTGATGGAGA
GTCTAGTGGTTGGAGACATTGCAGAGCTAAGACCAAACCAGGGGACACTGTCGCTGTTTACCAA
CGAGGCTGGAGGCATCTTAGATGACTTGATTGTAACCAATACTTCTGAGGGCCACCTGTATGTG
GTGTCCAACGCTGGCTGCTGGGAGAAAGATTTGGCCCTCATGCAGGACAAGGTCAGGGAGCTTC
AGAACCAGGGCAGAGATGTGGGCCTGGAGGTGTTGGATAATGCCCTGCTAGCTCTGCAAGGCCC
CACTGCAGCCCAGGTACTACAGGCCGGCGTGGCAGATGACCTGAGGAAACTGCCCTTCATGACC
AGTGCTGTGATGGAGGTGTTTGGCGTGTCTGGCTGCCGCGTGACCCGCTGTGGCTACACAGGAG
AGGATGGTGTGGAGATCTCGGTGCCGGTAGCGGGGGCAGTTCACCTGGCAACAGCTCTTCTGAA
AAACCCAGAGGTGAAGCTGGCAGGGCTGGCAGCCAGGGACAGCCTGCGCCTGGAGGCAGGCCTC
TGCCTGTATGGGAATGACATTGATGAACACACTACACCTGTGGAGGGCAGCCTCAGTTGGACAC
TGGGGAAGCGCCGCCGAGCTGCTATGGACTTCCCTGGAGCCAAGGTCATTGTTCCCCAGCTGAA
GGGCAAGGTGCAGCGGAGGCGTGTGGGATTGATGTGTGAGGGGGCCCCCATGCGGGCACACAGT
CCCATCCTGAACATGGAGGGTACCAAGATTGGTACTGTGACTAGTGGCTGCCCCTCCCCCTCTC
TGAAGAAGAATGTGGCGATGGGTTATGTGCCCTGCGAGTACAGTCGTCCTGGGACAATGCTGCT
GGTAGAGGTGCGGCGGAAGCAGCAGATGGCTGTAGTCAGCAAGATGCCCTTTGTGCCCACAAAC
TACTATACCCTCAAGTGAAGCTGGCTCAGGATGGGGCTGTCCCTTCCAGGAGTTTTGCCCCTAC
AAGGGGTTAGTCAAGAAGCTGAGGCAGAACTCACTGGGGGTGGGCAGTTAAGGTGGAGGCTGAT
TCTAATTGTCTGGTTGAGGGGCCACACCACCTATTCCCCCCACCTAACTCATGCCATTCCAGCT
TCCTTCAGGACCCTGCTTCTGAGTGACGGACCAGCTCACACAATGTCTTGTTTCAGTCCATGAT
CCCACTGACCTACTCTTGCCTGCTGAAGGGTAATGAGAAGCTTTGGTTCTGCCATCTCTCCCAC
TCTGCCAGGTGCTGGCTGTGGAGCAAAGGCTCACCTTTGTGGGGAGGATAAAACCTGCCCAACC
TACCTCACCATGGTTTTTCACATTGCAAAGGGTAATAACATGGGCAGTGCGGACTTAGGCTACC
CCCTCCAGTTTGCTTTCCGTAAATGCAAATTGTCCCTACTGCAAGTCAGGAATGATTGCTGACT
CACAGTAGGGCTGCTATGCCTGTGTGTAAACTTGGGGATGGCTGAGGGAACATAGACTCACTCT
TCCACATTCCCAAGTTGGTCTAGTGTGCTGCCCAGTAGCAAACCATGGCAGGCTCACCACCTAT
TCTGAGCTCCAGGGCTGCTGTAGGGCAGGGTGGGCTTCCTCCCAGACTTGCCTTACCCTGGGCT
GATCTTTGCCCCTGGTATGCATTAATGGACTCCACTGAATCCTGAAAAAAAAATTAAACTTCCT
TCTTACTTGCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003818906	(Get FASTA)	NCBI Sequence Viewer
	XP_003818907	(Get FASTA)	NCBI Sequence Viewer
	XP_008970516	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_003818907 ⟸ XM_003818859

- Peptide Label:

isoform X3

- Sequence:

show sequence

MQRAVSVVARLGFRLQAIPPALCHPLSCAQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFT
NEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLDNALLALQG
PTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATALL
KNPEVKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQL
KGKVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTML
LVEVRRKQQMAVVSKMPFVPTNYYTLK

hide sequence

RefSeq Acc Id:

XP_008970516 ⟸ XM_008972268

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPN
QGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLD
NALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGA
VHLATALLKNPEVKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPG
AKVIVPQLKGKVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCE
YSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTLK

hide sequence

RefSeq Acc Id:

XP_003818906 ⟸ XM_003818858

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQRAVSVVARLGFRLQAIPPALCHPLSCAQEVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDS
HTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILD
DLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLDNALLALQGPTAAQVLQ
AGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATALLKNPEVKLA
GLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGKVQRRR
VGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQ
QMAVVSKMPFVPTNYYTLK

hide sequence

RefSeq Acc Id:

ENSPPAP00000032405 ⟸ ENSPPAT00000055273

RefSeq Acc Id:

ENSPPAP00000032407 ⟸ ENSPPAT00000055275

RefSeq Acc Id:

ENSPPAP00000032423 ⟸ ENSPPAT00000055291

RefSeq Acc Id:

ENSPPAP00000032435 ⟸ ENSPPAT00000055303

RefSeq Acc Id:

ENSPPAP00000032438 ⟸ ENSPPAT00000055306

RefSeq Acc Id:

ENSPPAP00000032445 ⟸ ENSPPAT00000055313

RefSeq Acc Id:

ENSPPAP00000032447 ⟸ ENSPPAT00000055315

RefSeq Acc Id:

ENSPPAP00000032442 ⟸ ENSPPAT00000055310

RefSeq Acc Id:

ENSPPAP00000032444 ⟸ ENSPPAT00000055312

Protein Domains

GCV_T GCV_T_C

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000038969	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000032405	ENTREZGENE, UniProtKB/TrEMBL
	ENSPPAP00000032407	ENTREZGENE, UniProtKB/TrEMBL
	ENSPPAP00000032423	UniProtKB/TrEMBL
	ENSPPAP00000032435	UniProtKB/TrEMBL
	ENSPPAP00000032438	UniProtKB/TrEMBL
	ENSPPAP00000032442	UniProtKB/TrEMBL
	ENSPPAP00000032444	UniProtKB/TrEMBL
	ENSPPAP00000032445	UniProtKB/TrEMBL
	ENSPPAP00000032447	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000055273	UniProtKB/TrEMBL
	ENSPPAT00000055275	UniProtKB/TrEMBL
	ENSPPAT00000055291	UniProtKB/TrEMBL
	ENSPPAT00000055303	UniProtKB/TrEMBL
	ENSPPAT00000055306	UniProtKB/TrEMBL
	ENSPPAT00000055310	UniProtKB/TrEMBL
	ENSPPAT00000055312	UniProtKB/TrEMBL
	ENSPPAT00000055313	UniProtKB/TrEMBL
	ENSPPAT00000055315	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1360.120	UniProtKB/TrEMBL
InterPro	GCS_T	UniProtKB/TrEMBL
	GCST/YgfZ/DmdA	UniProtKB/TrEMBL
	GCV_T_C	UniProtKB/TrEMBL
	GCV_T_N	UniProtKB/TrEMBL
	GcvT/YgfZ_C	UniProtKB/TrEMBL
	TrmE/GcvT_dom1	UniProtKB/TrEMBL
KEGG Report	pps:100988475	UniProtKB/TrEMBL
NCBI Gene	AMT	ENTREZGENE
Pfam	GCV_T	UniProtKB/TrEMBL
	GCV_T_C	UniProtKB/TrEMBL
PIRSF	GcvT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF101790	UniProtKB/TrEMBL
TIGRFAMs	gcvT	UniProtKB/TrEMBL
UniProt	A0A2R9BRU1_PANPA	UniProtKB/TrEMBL
	A0A2R9BRX1_PANPA	UniProtKB/TrEMBL
	A0A2R9BRX7_PANPA	UniProtKB/TrEMBL
	A0A2R9BRY2_PANPA	UniProtKB/TrEMBL
	A0A2R9BRY4_PANPA	UniProtKB/TrEMBL
	A0A2R9BVB8_PANPA	UniProtKB/TrEMBL
	A0A2R9BVE6_PANPA	UniProtKB/TrEMBL
	A0A2R9BVF6_PANPA	UniProtKB/TrEMBL
	A0A2R9C100_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB