AMT (aminomethyltransferase) - Rat Genome Database
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Gene: AMT (aminomethyltransferase) Pan paniscus
Analyze
Symbol: AMT
Name: aminomethyltransferase
RGD ID: 11750219
Description: ENCODES a protein that exhibits aminomethyltransferase activity (ortholog); INVOLVED IN glycine decarboxylation via glycine cleavage system (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; folate cycle metabolic pathway; ASSOCIATED WITH Acidoses (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); epilepsy (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: aminomethyltransferase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,589,193 - 50,594,968 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,589,193 - 50,594,968 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,344,590 - 49,350,383 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
AMT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,589,193 - 50,594,968 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,589,193 - 50,594,968 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,344,590 - 49,350,383 (-)NCBIMhudiblu_PPA_v0panPan3
AMT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,416,775 - 49,422,753 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl349,416,778 - 49,422,685 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,416,778 - 49,422,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,454,211 - 49,459,906 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,429,215 - 49,435,016 (-)NCBINCBI36hg18NCBI36
Build 34349,429,215 - 49,435,016NCBI
Celera349,418,998 - 49,424,898 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,513,933 - 49,519,839 (-)NCBIHuRef
CHM1_1349,406,978 - 49,412,879 (-)NCBICHM1_1
Amt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,174,104 - 108,179,501 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,174,052 - 108,179,501 (+)Ensembl
GRCm389108,296,905 - 108,302,302 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,296,853 - 108,302,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,199,253 - 108,203,928 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,155,015 - 108,159,690 (+)NCBImm8
Celera9107,905,964 - 107,910,640 (+)NCBICelera
Cytogenetic Map9F2NCBI
Amt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,981,620 - 108,988,127 (+)NCBI
Rnor_6.0 Ensembl8117,068,582 - 117,077,913 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,068,388 - 117,078,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,421,237 - 116,427,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,284,894 - 108,291,149 (+)NCBICelera
Cytogenetic Map8q32NCBI
Amt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,351,743 - 1,358,220 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,351,743 - 1,358,220 (-)NCBIChiLan1.0ChiLan1.0
AMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,815,814 - 39,820,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,815,449 - 39,820,907 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Amt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,049,364 - 1,054,458 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,995,595 - 32,002,470 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,995,600 - 32,002,514 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AMT
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,813,601 - 10,820,628 (-)NCBI
ChlSab1.1 Ensembl2210,814,358 - 10,819,632 (-)Ensembl
Amt
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,366,023 - 3,372,266 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055273   ⟹   ENSPPAP00000032405
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,193 - 50,594,968 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055275   ⟹   ENSPPAP00000032407
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,193 - 50,594,968 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055291   ⟹   ENSPPAP00000032423
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,759 - 50,594,740 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055303   ⟹   ENSPPAP00000032435
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,955 - 50,594,740 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055306   ⟹   ENSPPAP00000032438
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,955 - 50,594,740 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055310   ⟹   ENSPPAP00000032442
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,955 - 50,594,740 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055312   ⟹   ENSPPAP00000032444
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,955 - 50,594,740 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055313   ⟹   ENSPPAP00000032445
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,589,955 - 50,594,740 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055315   ⟹   ENSPPAP00000032447
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,591,311 - 50,594,740 (-)Ensembl
RefSeq Acc Id: XM_003818858   ⟹   XP_003818906
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,589,193 - 50,594,968 (-)NCBI
Mhudiblu_PPA_v0349,344,590 - 49,350,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003818859   ⟹   XP_003818907
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,589,193 - 50,594,968 (-)NCBI
Mhudiblu_PPA_v0349,344,590 - 49,350,277 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972268   ⟹   XP_008970516
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,589,193 - 50,594,968 (-)NCBI
Mhudiblu_PPA_v0349,344,590 - 49,350,339 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003818906 (Get FASTA)   NCBI Sequence Viewer  
  XP_003818907 (Get FASTA)   NCBI Sequence Viewer  
  XP_008970516 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003818907   ⟸   XM_003818859
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008970516   ⟸   XM_008972268
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003818906   ⟸   XM_003818858
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000032405   ⟸   ENSPPAT00000055273
RefSeq Acc Id: ENSPPAP00000032407   ⟸   ENSPPAT00000055275
RefSeq Acc Id: ENSPPAP00000032423   ⟸   ENSPPAT00000055291
RefSeq Acc Id: ENSPPAP00000032435   ⟸   ENSPPAT00000055303
RefSeq Acc Id: ENSPPAP00000032438   ⟸   ENSPPAT00000055306
RefSeq Acc Id: ENSPPAP00000032445   ⟸   ENSPPAT00000055313
RefSeq Acc Id: ENSPPAP00000032447   ⟸   ENSPPAT00000055315
RefSeq Acc Id: ENSPPAP00000032442   ⟸   ENSPPAT00000055310
RefSeq Acc Id: ENSPPAP00000032444   ⟸   ENSPPAT00000055312
Protein Domains
GCV_T   GCV_T_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038969 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000032405 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000032407 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000032423 UniProtKB/TrEMBL
  ENSPPAP00000032435 UniProtKB/TrEMBL
  ENSPPAP00000032438 UniProtKB/TrEMBL
  ENSPPAP00000032442 UniProtKB/TrEMBL
  ENSPPAP00000032444 UniProtKB/TrEMBL
  ENSPPAP00000032445 UniProtKB/TrEMBL
  ENSPPAP00000032447 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055273 UniProtKB/TrEMBL
  ENSPPAT00000055275 UniProtKB/TrEMBL
  ENSPPAT00000055291 UniProtKB/TrEMBL
  ENSPPAT00000055303 UniProtKB/TrEMBL
  ENSPPAT00000055306 UniProtKB/TrEMBL
  ENSPPAT00000055310 UniProtKB/TrEMBL
  ENSPPAT00000055312 UniProtKB/TrEMBL
  ENSPPAT00000055313 UniProtKB/TrEMBL
  ENSPPAT00000055315 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1360.120 UniProtKB/TrEMBL
InterPro GCS_T UniProtKB/TrEMBL
  GCST/YgfZ/DmdA UniProtKB/TrEMBL
  GCV_T_C UniProtKB/TrEMBL
  GCV_T_N UniProtKB/TrEMBL
  GcvT/YgfZ_C UniProtKB/TrEMBL
  TrmE/GcvT_dom1 UniProtKB/TrEMBL
KEGG Report pps:100988475 UniProtKB/TrEMBL
NCBI Gene AMT ENTREZGENE
Pfam GCV_T UniProtKB/TrEMBL
  GCV_T_C UniProtKB/TrEMBL
PIRSF GcvT UniProtKB/TrEMBL
Superfamily-SCOP SSF101790 UniProtKB/TrEMBL
TIGRFAMs gcvT UniProtKB/TrEMBL
UniProt A0A2R9BRU1_PANPA UniProtKB/TrEMBL
  A0A2R9BRX1_PANPA UniProtKB/TrEMBL
  A0A2R9BRX7_PANPA UniProtKB/TrEMBL
  A0A2R9BRY2_PANPA UniProtKB/TrEMBL
  A0A2R9BRY4_PANPA UniProtKB/TrEMBL
  A0A2R9BVB8_PANPA UniProtKB/TrEMBL
  A0A2R9BVE6_PANPA UniProtKB/TrEMBL
  A0A2R9BVF6_PANPA UniProtKB/TrEMBL
  A0A2R9C100_PANPA UniProtKB/TrEMBL