LOC100972297 (polycystin-1) - Rat Genome Database
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Gene: LOC100972297 (polycystin-1) Pan paniscus
Analyze
Symbol: LOC100972297
Name: polycystin-1
RGD ID: 11749047
Description: ENCODES a protein that exhibits calcium channel activity (ortholog); cation channel activity (ortholog); ion channel binding (ortholog); INVOLVED IN blood vessel development (ortholog); branching morphogenesis of an epithelial tube (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); FOUND IN basolateral plasma membrane (ortholog); calcium channel complex (ortholog); cation channel complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nuclear pore complex-interacting protein family member B15; nuclear pore complex-interacting protein family member B9; PKD1; polycystin 1, transient receptor potential channel interacting
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1162,176,778 - 2,185,337 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v016604,927 - 1,697,831 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
blood vessel development  (ISO)
branching morphogenesis of an epithelial tube  (ISO)
calcium ion transmembrane transport  (ISO)
calcium ion transport  (ISO)
cartilage condensation  (ISO)
cartilage development  (ISO)
cell cycle arrest  (ISO)
cell-cell adhesion  (ISO)
cell-cell signaling by wnt  (ISO)
cytoplasmic sequestering of transcription factor  (ISO)
detection of mechanical stimulus  (ISO)
digestive tract development  (ISO)
embryonic placenta development  (ISO)
establishment of cell polarity  (ISO)
genitalia development  (ISO)
heart development  (ISO)
in utero embryonic development  (ISO)
kidney development  (ISO)
liver development  (ISO)
lung epithelium development  (ISO)
lymph vessel morphogenesis  (ISO)
mesonephric duct development  (ISO)
mesonephric tubule development  (ISO)
metanephric ascending thin limb development  (ISO)
metanephric collecting duct development  (ISO)
metanephric distal tubule morphogenesis  (ISO)
metanephric proximal tubule development  (ISO)
neural tube development  (ISO)
nitrogen compound metabolic process  (ISO)
peptidyl-serine phosphorylation  (ISO)
placenta blood vessel development  (ISO)
positive regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of protein binding  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
protein export from nucleus  (ISO)
protein heterotetramerization  (ISO)
receptor signaling pathway via JAK-STAT  (ISO)
regulation of cell adhesion  (ISO)
regulation of G1/S transition of mitotic cell cycle  (ISO)
regulation of mitotic spindle organization  (ISO)
regulation of proteasomal protein catabolic process  (ISO)
response to fluid shear stress  (ISO)
skin development  (ISO)
spinal cord development  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
LOC100972297
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1162,176,778 - 2,185,337 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v016604,927 - 1,697,831 (+)NCBIMhudiblu_PPA_v0panPan3
PKD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl162,088,708 - 2,135,898 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl162,088,710 - 2,135,898 (-)EnsemblGRCh38hg38GRCh38
GRCh38162,088,708 - 2,135,898 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37162,138,709 - 2,185,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,078,712 - 2,125,900 (-)NCBINCBI36hg18NCBI36
Build 34162,078,711 - 2,125,900NCBI
Celera162,350,824 - 2,400,282 (-)NCBI
Cytogenetic Map16p13.3NCBI
HuRef162,063,439 - 2,112,133 (-)NCBIHuRef
CHM1_1162,138,626 - 2,185,837 (-)NCBICHM1_1
Pkd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,767,657 - 24,815,488 (+)NCBIGRCm39mm39
GRCm39 Ensembl1724,768,808 - 24,815,482 (+)Ensembl
GRCm381724,548,689 - 24,596,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,549,834 - 24,596,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,686,895 - 24,733,459 (+)NCBIGRCm37mm9NCBIm37
MGSCv361724,277,550 - 24,324,083 (+)NCBImm8
Celera1725,067,435 - 25,114,509 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.4NCBI
Pkd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,573,779 - 13,621,138 (+)NCBI
Rnor_6.0 Ensembl1013,915,214 - 13,962,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01013,914,057 - 13,962,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01013,731,035 - 13,778,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,801,445 - 13,848,212 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11013,801,471 - 13,848,236 (+)NCBI
Celera1013,254,601 - 13,301,131 (+)NCBICelera
Cytogenetic Map10q12NCBI
Pkd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,145,640 - 15,178,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,132,555 - 15,178,377 (+)NCBIChiLan1.0ChiLan1.0
PKD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl638,837,964 - 38,865,503 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1638,811,051 - 38,865,503 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pkd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366941,923,383 - 1,958,160 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,849,609 - 39,899,455 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,849,579 - 39,899,455 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,282,099 - 42,331,966 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PKD1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,985,165 - 2,031,518 (-)NCBI
ChlSab1.1 Ensembl51,983,632 - 2,015,551 (-)Ensembl
Pkd1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913118,520 - 166,939 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034940947   ⟹   XP_034796838
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v016604,927 - 615,786 (+)NCBI
RefSeq Acc Id: XM_034940948   ⟹   XP_034796839
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v016605,749 - 615,786 (+)NCBI
RefSeq Acc Id: XM_034940949   ⟹   XP_034796840
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0161,669,429 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940950   ⟹   XP_034796841
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0161,662,410 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940951   ⟹   XP_034796842
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v016605,749 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940952   ⟹   XP_034796843
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v016605,749 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940953   ⟹   XP_034796844
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v016918,352 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940954   ⟹   XP_034796845
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v016918,341 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940955   ⟹   XP_034796846
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0161,669,463 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940956   ⟹   XP_034796847
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0161,662,469 - 1,697,831 (+)NCBI
RefSeq Acc Id: XM_034940957   ⟹   XP_034796848
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0161,652,862 - 1,697,831 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_034796838   ⟸   XM_034940947
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034796842   ⟸   XM_034940951
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034796843   ⟸   XM_034940952
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034796839   ⟸   XM_034940948
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034796845   ⟸   XM_034940954
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034796844   ⟸   XM_034940953
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034796848   ⟸   XM_034940957
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034796841   ⟸   XM_034940950
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034796847   ⟸   XM_034940956
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034796840   ⟸   XM_034940949
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034796846   ⟸   XM_034940955
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
NCBI Gene PKD1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100972297  polycystin-1  PKD1  polycystin 1, transient receptor potential channel interacting  Symbol and/or name change 5135510 APPROVED