AEBP2 (AE binding protein 2) - Rat Genome Database

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Gene: AEBP2 (AE binding protein 2) Pan paniscus
Analyze
Symbol: AEBP2
Name: AE binding protein 2
RGD ID: 11747773
Description: ENCODES a protein that exhibits metal ion binding (inferred); transcription coregulator activity (inferred); INVOLVED IN regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH genetic disease (ortholog); Hirschsprung's disease (ortholog); Waardenburg syndrome (ortholog); FOUND IN ESC/E(Z) complex (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein AEBP2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21024,884,711 - 25,045,660 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,881,473 - 25,005,854 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01219,440,493 - 19,522,549 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11219,825,465 - 19,907,462 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1219,825,465 - 19,907,462 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
AEBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21024,884,711 - 25,045,660 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,881,473 - 25,005,854 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01219,440,493 - 19,522,549 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11219,825,465 - 19,907,462 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1219,825,465 - 19,907,462 (+)Ensemblpanpan1.1panPan2
AEBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381219,404,072 - 19,522,227 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1219,404,045 - 19,720,801 (+)EnsemblGRCh38hg38GRCh38
GRCh371219,592,426 - 19,675,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361219,483,900 - 19,564,846 (+)NCBINCBI36Build 36hg18NCBI36
Build 341219,483,899 - 19,564,845NCBI
Celera1224,745,851 - 24,829,274 (+)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1219,361,681 - 19,444,406 (+)NCBIHuRef
CHM1_11219,558,199 - 19,640,737 (+)NCBICHM1_1
T2T-CHM13v2.01219,280,830 - 19,399,011 (+)NCBIT2T-CHM13v2.0
Aebp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396140,567,480 - 140,624,198 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6140,546,644 - 140,713,010 (+)EnsemblGRCm39 Ensembl
GRCm386140,622,454 - 140,678,472 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6140,622,663 - 140,678,472 (+)EnsemblGRCm38mm10GRCm38
MGSCv376140,571,184 - 140,625,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366140,585,069 - 140,639,824 (+)NCBIMGSCv36mm8
Celera6143,668,935 - 143,740,627 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map670.71NCBI
Aebp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84175,258,286 - 175,297,149 (+)NCBIGRCr8
mRatBN7.24173,527,881 - 173,566,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4173,528,344 - 173,593,100 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4179,823,344 - 179,860,945 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04175,607,547 - 175,645,144 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04174,228,112 - 174,265,711 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04174,799,378 - 174,863,260 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4174,810,959 - 174,863,260 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04239,031,912 - 239,094,663 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44177,821,215 - 177,876,673 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14178,028,657 - 178,089,785 (+)NCBI
Celera4162,087,101 - 162,139,793 (+)NCBICelera
Cytogenetic Map4q44NCBI
Aebp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541315,495,073 - 15,561,227 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541315,514,247 - 15,561,233 (+)NCBIChiLan1.0ChiLan1.0
AEBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12727,654,141 - 27,722,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2727,656,406 - 27,722,433 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2718,726,338 - 18,820,890 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02727,963,731 - 28,059,654 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2727,970,883 - 28,059,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12727,812,537 - 27,907,188 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02727,795,952 - 27,891,792 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02718,431,183 - 18,526,580 (+)NCBIUU_Cfam_GSD_1.0
Aebp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494588,905,278 - 88,967,401 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365486,810,002 - 6,889,614 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365486,828,190 - 6,890,287 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AEBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl553,617,358 - 53,691,509 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1553,617,362 - 53,691,487 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2556,913,021 - 56,987,152 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AEBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11119,288,551 - 19,401,925 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1119,288,493 - 19,374,301 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606915,752,746 - 15,865,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aebp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475218,956,481 - 19,023,620 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475218,954,095 - 19,023,656 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000040445   ⟹   ENSPPAP00000017732
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1219,825,465 - 19,907,462 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040453   ⟹   ENSPPAP00000017740
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1219,825,656 - 19,905,163 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040470   ⟹   ENSPPAP00000017756
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1219,825,656 - 19,905,163 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040478   ⟹   ENSPPAP00000017764
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1219,826,659 - 19,905,163 (+)Ensembl
RefSeq Acc Id: XM_003816546   ⟹   XP_003816594
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21024,884,711 - 24,966,835 (+)NCBI
NHGRI_mPanPan11224,881,473 - 24,964,255 (+)NCBI
Mhudiblu_PPA_v01219,440,493 - 19,522,549 (+)NCBI
PanPan1.11219,825,465 - 19,907,462 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969591   ⟹   XP_008967839
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21024,884,711 - 24,966,835 (+)NCBI
NHGRI_mPanPan11224,881,473 - 24,964,255 (+)NCBI
Mhudiblu_PPA_v01219,440,493 - 19,522,549 (+)NCBI
PanPan1.11219,825,465 - 19,907,462 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034935463   ⟹   XP_034791354
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21024,884,910 - 24,963,326 (+)NCBI
NHGRI_mPanPan11224,881,534 - 24,960,091 (+)NCBI
Mhudiblu_PPA_v01219,440,556 - 19,516,851 (+)NCBI
RefSeq Acc Id: XM_055095458   ⟹   XP_054951433
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21024,884,898 - 25,045,660 (+)NCBI
NHGRI_mPanPan11224,881,533 - 25,005,854 (+)NCBI
RefSeq Acc Id: XM_055095459   ⟹   XP_054951434
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21024,884,910 - 25,045,660 (+)NCBI
NHGRI_mPanPan11224,881,533 - 25,005,854 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003816594   ⟸   XM_003816546
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AK33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967839   ⟸   XM_008969591
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_034791354   ⟸   XM_034935463
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000017732   ⟸   ENSPPAT00000040445
RefSeq Acc Id: ENSPPAP00000017740   ⟸   ENSPPAT00000040453
RefSeq Acc Id: ENSPPAP00000017764   ⟸   ENSPPAT00000040478
RefSeq Acc Id: ENSPPAP00000017756   ⟸   ENSPPAT00000040470
RefSeq Acc Id: XP_054951433   ⟸   XM_055095458
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054951434   ⟸   XM_055095459
- Peptide Label: isoform X3
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031923 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040445.1 UniProtKB/TrEMBL
  ENSPPAT00000040453.1 UniProtKB/TrEMBL
  ENSPPAT00000040470.1 UniProtKB/TrEMBL
  ENSPPAT00000040478.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100989699 UniProtKB/TrEMBL
NCBI Gene AEBP2 ENTREZGENE
PANTHER ZINC FINGER PROTEIN AEBP2 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN AEBP2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9AK33 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AK66_PANPA UniProtKB/TrEMBL
  A0A2R9APS9_PANPA UniProtKB/TrEMBL
  A0A2R9ASC1_PANPA UniProtKB/TrEMBL