ZNF564 (zinc finger protein 564) - Rat Genome Database

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Gene: ZNF564 (zinc finger protein 564) Pan paniscus
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Symbol: ZNF564
Name: zinc finger protein 564
RGD ID: 11747392
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,454,982 - 17,506,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,455,603 - 16,507,544 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,088,249 - 12,141,600 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,836,581 - 12,861,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,836,581 - 12,861,815 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF564
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,454,982 - 17,506,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,455,603 - 16,507,544 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,088,249 - 12,141,600 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,836,581 - 12,861,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,836,581 - 12,861,815 (-)Ensemblpanpan1.1panPan2
ZNF564
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,525,373 - 12,551,482 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,525,373 - 12,551,542 (-)EnsemblGRCh38hg38GRCh38
GRCh371912,636,187 - 12,662,296 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,497,540 - 12,523,317 (-)NCBINCBI36Build 36hg18NCBI36
Build 341912,497,184 - 12,523,288NCBI
Celera1912,529,968 - 12,556,146 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1912,208,668 - 12,234,840 (-)NCBIHuRef
CHM1_11912,636,096 - 12,662,558 (-)NCBICHM1_1
T2T-CHM13v2.01912,653,777 - 12,679,902 (-)NCBIT2T-CHM13v2.0
ZNF564
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,238,707 - 11,257,482 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,239,671 - 11,242,024 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,536,336 - 8,564,081 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000065926   ⟹   ENSPPAP00000042993
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1912,836,581 - 12,861,815 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000065927   ⟹   ENSPPAP00000042994
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1912,859,454 - 12,861,610 (-)Ensembl
RefSeq Acc Id: XM_024926651   ⟹   XP_024782419
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,454,982 - 17,457,959 (-)NCBI
NHGRI_mPanPan11916,455,603 - 16,458,580 (-)NCBI
Mhudiblu_PPA_v01912,088,249 - 12,091,226 (-)NCBI
PanPan1.11912,836,931 - 12,839,855 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055103656   ⟹   XP_054959631
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,454,982 - 17,483,376 (-)NCBI
NHGRI_mPanPan11916,455,603 - 16,484,002 (-)NCBI
RefSeq Acc Id: XM_057300614   ⟹   XP_057156597
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,454,982 - 17,483,376 (-)NCBI
NHGRI_mPanPan11916,455,603 - 16,484,002 (-)NCBI
RefSeq Acc Id: XM_057300615   ⟹   XP_057156598
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,454,982 - 17,483,375 (-)NCBI
NHGRI_mPanPan11916,455,603 - 16,484,000 (-)NCBI
RefSeq Acc Id: XM_057300616   ⟹   XP_057156599
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,454,982 - 17,506,893 (-)NCBI
NHGRI_mPanPan11916,455,603 - 16,507,544 (-)NCBI
RefSeq Acc Id: XM_063599923   ⟹   XP_063455993
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,454,982 - 17,478,252 (-)NCBI
RefSeq Acc Id: XP_024782419   ⟸   XM_024926651
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSPPAP00000042994   ⟸   ENSPPAT00000065927
Ensembl Acc Id: ENSPPAP00000042993   ⟸   ENSPPAT00000065926
RefSeq Acc Id: XP_054959631   ⟸   XM_055103656
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057156599   ⟸   XM_057300616
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CNX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156597   ⟸   XM_057300614
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057156598   ⟸   XM_057300615
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CNX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063455993   ⟸   XM_063599923
- Peptide Label: isoform X4
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000044039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065926.1 UniProtKB/TrEMBL
  ENSPPAT00000065927.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro C2H2-ZF_domain UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100976665 UniProtKB/TrEMBL
NCBI Gene ZNF564 ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 628 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9CM01_PANPA UniProtKB/TrEMBL
  A0A2R9CNX2 ENTREZGENE, UniProtKB/TrEMBL