LOC103785360 (neurotrophin-4) - Rat Genome Database

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Gene: LOC103785360 (neurotrophin-4) Pan paniscus
Analyze
Symbol: LOC103785360
Name: neurotrophin-4
RGD ID: 11747103
Description: ENCODES a protein that exhibits growth factor activity (inferred); signaling receptor binding (inferred); INVOLVED IN adult locomotory behavior (ortholog); epidermis development (ortholog); ganglion mother cell fate determination (ortholog); ASSOCIATED WITH asthma (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurotrophin 4; NTF4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11954,994,710 - 55,010,424 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,995,009 - 54,995,641 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01946,041,053 - 46,041,808 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC103785360
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11954,994,710 - 55,010,424 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,995,009 - 54,995,641 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01946,041,053 - 46,041,808 (-)NCBIMhudiblu_PPA_v0panPan3
NTF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,058,284 - 49,065,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1949,061,066 - 49,065,076 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,564,385 - 49,568,292 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,256,209 - 54,260,047 (-)NCBINCBI36hg18NCBI36
Build 341954,256,210 - 54,258,937NCBI
Celera1946,431,605 - 46,435,443 (-)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1945,941,069 - 45,943,797 (-)NCBIHuRef
CHM1_11949,566,638 - 49,569,366 (-)NCBICHM1_1
T2T-CHM13v2.01952,055,917 - 52,059,823 (-)NCBI
Ntf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,063,119 - 45,066,603 (+)NCBIGRCm39mm39
GRCm39 Ensembl745,063,119 - 45,066,603 (+)Ensembl
GRCm38745,413,695 - 45,417,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,413,695 - 45,417,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,669,065 - 52,672,549 (+)NCBIGRCm37mm9NCBIm37
MGSCv36745,281,737 - 45,285,221 (+)NCBImm8
Celera740,869,726 - 40,873,213 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.3NCBI
Ntf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2195,893,560 - 95,896,391 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl195,893,457 - 95,897,243 (+)Ensembl
Rnor_6.01101,405,314 - 101,408,145 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,405,314 - 101,408,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,484,724 - 102,487,555 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,885,577 - 95,888,408 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1195,963,687 - 95,966,519 (+)NCBI
Celera190,149,153 - 90,151,984 (+)NCBICelera
RH 3.4 Map1909.3RGD
Cytogenetic Map1q22NCBI
Ntf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,647,685 - 1,650,553 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,647,685 - 1,650,553 (+)NCBIChiLan1.0ChiLan1.0
NTF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,371,335 - 107,377,238 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,371,335 - 107,376,987 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01107,895,849 - 107,901,840 (+)NCBI
ROS_Cfam_1.0 Ensembl1107,895,849 - 107,901,548 (+)Ensembl
UMICH_Zoey_3.11107,563,703 - 107,569,398 (+)NCBI
UNSW_CanFamBas_1.01107,209,908 - 107,215,558 (+)NCBI
UU_Cfam_GSD_1.01108,045,520 - 108,051,170 (+)NCBI
Ntf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,398,887 - 21,401,144 (-)NCBI
SpeTri2.0NW_0049366643,017,108 - 3,017,955 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,271,246 - 54,274,092 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,271,244 - 54,288,846 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,039,657 - 50,057,398 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NTF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,254,693 - 42,284,899 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl642,279,190 - 42,279,822 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,170,689 - 22,171,841 (-)NCBIVero_WHO_p1.0
Ntf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,007,801 - 5,008,451 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248325,005,935 - 5,008,694 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034945146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000024496   ⟹   ENSPPAP00000005402
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1954,995,009 - 54,995,641 (-)Ensembl
RefSeq Acc Id: XM_034945146   ⟹   XP_034801037
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01946,041,053 - 46,041,808 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034801037 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034801037   ⟸   XM_034945146
RefSeq Acc Id: ENSPPAP00000005402   ⟸   ENSPPAT00000024496
Protein Domains
NGF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000022345 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000005402.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000024496.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  Nerve_growth_factor-like UniProtKB/TrEMBL
  Nerve_growth_factor-rel UniProtKB/TrEMBL
  Nerve_growth_factor_CS UniProtKB/TrEMBL
  Neurotrophin-4 UniProtKB/TrEMBL
NCBI Gene NTF4 ENTREZGENE
PANTHER PTHR11589 UniProtKB/TrEMBL
  PTHR11589:SF8 UniProtKB/TrEMBL
Pfam NGF UniProtKB/TrEMBL
PIRSF NGF UniProtKB/TrEMBL
PRINTS NEUROTROPHN4 UniProtKB/TrEMBL
  NGF UniProtKB/TrEMBL
PROSITE NGF_1 UniProtKB/TrEMBL
SMART NGF UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt A0A2R8ZKB9_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC103785360  neurotrophin-4  NTF4  neurotrophin 4  Symbol and/or name change 5135510 APPROVED