SNCB (synuclein beta) - Rat Genome Database

Name: SNCB
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SNCB (synuclein beta) Pan paniscus

Analyze

Symbol:

SNCB

Name:

synuclein beta

RGD ID:

11746906

Description:

ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); dopamine metabolic process (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); Alzheimer's disease (ortholog); Autosomal Dominant Diffuse Lewy Body Disease (ortholog); FOUND IN axon terminus (ortholog); growth cone (ortholog); neuronal cell body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

beta-synuclein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNCB (synuclein beta)	NCBI	Ortholog
Mus musculus (house mouse):	Sncb (synuclein, beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sncb (synuclein, beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sncb (synuclein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNCB (synuclein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sncb (synuclein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNCB (synuclein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNCB (synuclein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sncb (synuclein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,700,736 - 171,711,148 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	169,840,275 - 169,850,687 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	171,918,297 - 171,928,672 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	178,988,314 - 178,998,805 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	178,988,439 - 178,998,800 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute megakaryocytic leukemia (ISO)

Alzheimer's disease (ISO)

Autosomal Dominant Diffuse Lewy Body Disease (ISO)

Brain Injuries (ISO)

Chromosome 5, Trisomy 5q (ISO)

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

Experimental Autoimmune Encephalomyelitis (ISO)

genetic disease (ISO)

GM2 gangliosidosis (ISO)

Lewy body dementia (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

pantothenate kinase-associated neurodegeneration (ISO)

Parkinson's disease (ISO)

Pick's disease (ISO)

Sotos syndrome (ISO)

uveitis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chemical synaptic transmission (IEA,ISO)

dopamine metabolic process (IEA,ISO)

negative regulation of neuron apoptotic process (IEA,ISO)

neuron apoptotic process (IEA,ISO)

synapse organization (IEA,ISO)

synaptic vesicle endocytosis (IEA)

Cellular Component

axon terminus (IEA,ISO)

cytoplasm (IEA)

growth cone (ISO)

inclusion body (IEA)

neuronal cell body (IEA,ISO)

presynapse (IEA)

presynaptic cytosol (ISO)

synapse (IEA)

terminal bouton (ISO)

Molecular Function

alpha-tubulin binding (ISO)

beta-tubulin binding (ISO)

calcium ion binding (IEA)

cuprous ion binding (IEA)

protein binding (ISO)

transition metal ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SNCB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,700,736 - 171,711,148 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	169,840,275 - 169,850,687 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	171,918,297 - 171,928,672 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	178,988,314 - 178,998,805 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	178,988,439 - 178,998,800 (-)	Ensembl	panpan1.1		panPan2

SNCB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	176,620,082 - 176,630,534 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	176,620,082 - 176,630,556 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	176,047,083 - 176,057,535 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	175,979,816 - 175,990,163 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	175,979,816 - 175,990,163	NCBI
Celera	5	172,442,697 - 172,464,864 (+)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	170,970,990 - 170,981,256 (-)	NCBI		HuRef
CHM1_1	5	175,479,633 - 175,489,981 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	177,166,665 - 177,177,114 (-)	NCBI		T2T-CHM13v2.0

Sncb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	54,906,673 - 54,914,435 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	54,906,673 - 54,914,408 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	54,758,860 - 54,766,622 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	54,758,860 - 54,766,595 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	54,860,221 - 54,867,801 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	54,768,482 - 54,776,062 (-)	NCBI		MGSCv36	mm8
Celera	13	55,824,326 - 55,831,944 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	29.28	NCBI

Sncb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,851,825 - 9,860,143 (+)	NCBI		GRCr8
mRatBN7.2	17	9,846,802 - 9,855,013 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,846,802 - 9,855,012 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	9,860,708 - 9,869,180 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	11,394,284 - 11,402,568 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,857,117 - 9,865,594 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	10,384,472 - 10,392,776 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,384,511 - 10,392,843 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	12,510,521 - 12,518,728 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	15,907,498 - 15,915,705 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	15,907,640 - 15,915,194 (+)	NCBI
Celera	17	9,921,982 - 9,930,166 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Sncb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	28,894,204 - 28,903,095 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	28,894,204 - 28,903,095 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNCB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	36,710,236 - 36,719,455 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	36,616,039 - 36,764,501 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	36,677,103 - 36,686,289 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	37,076,409 - 37,085,600 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	37,048,276 - 37,103,097 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	36,902,261 - 36,911,447 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	37,089,947 - 37,099,120 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	37,598,214 - 37,607,385 (+)	NCBI		UU_Cfam_GSD_1.0

Sncb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	121,853,363 - 121,863,441 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	878,286 - 888,331 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	878,270 - 888,346 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNCB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	81,287,759 - 81,302,861 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	81,287,764 - 81,302,859 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	82,889,540 - 82,899,597 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNCB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	78,626,876 - 78,637,337 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	78,627,479 - 78,636,287 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	9,760,600 - 9,770,954 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sncb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	13,506,180 - 13,513,712 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	13,506,181 - 13,513,979 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003806842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008958046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008958052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057302421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000047687 ⟹ ENSPPAP00000024861

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	178,988,439 - 178,998,800 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000047689 ⟹ ENSPPAP00000024863

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	178,989,042 - 178,997,904 (-)	Ensembl

RefSeq Acc Id:

XM_003806842 ⟹ XP_003806890

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,700,736 - 171,711,133 (-)	NCBI
NHGRI_mPanPan1	5	169,840,275 - 169,850,671 (-)	NCBI
Mhudiblu_PPA_v0	5	171,918,297 - 171,928,672 (-)	NCBI
PanPan1.1	5	178,988,314 - 178,998,800 (-)	NCBI

Sequence:

show sequence

CGCCAGGGGGAGTGCTGAGCTCAGAGCTGCCGCAGCGCCGGAGCCGGAGCCGGAGCGCGCGAGC
TCGCAGGGCGCGAGGAACGAGCGGTGGCAGGCTACAAACCCGAGACCCGGGCACTGCTGCGCTC
CTGCTCAGGACCCGCGACCCGAGCGCCTGACCCCGGCCCTATCCCCCCTCCGGCCCCTAGTCCA
CCCCGGCCTGGCCTAGCGGAGCCCCCGCGTCCGCCCGCCGCAGCCGCCGCTCCATCCCCAGCCC
CGGCCCCGCATCCAGGCCGCCAGGATGGACGTGTTCATGAAGGGCCTGTCCATGGCCAAGGAGG
GCGTTGTGGCAGCCGCGGAGAAAACCAAGCAGGGGGTCACCGAGGCGGCGGAGAAGACCAAGGA
GGGCGTCCTCTACGTCGGAAGCAAGACCCGAGAAGGTGTGGTACAAGGTGTGGCTTCAGTGGCT
GAAAAAACCAAGGAACAGGCCTCACATCTGGGAGGAGCTGTGTTCTCTGGGGCAGGGAACATCG
CAGCAGCCACAGGACTGGTGAAGAGGGAGGAATTCCCTACTGATCTGAAGCCAGAGGAAGTGGC
CCAGGAAGCTGCTGAGGAGCCACTGATTGAGCCCCTGATGGAGCCAGAAGGGGAGAGTTATGAG
GACCCACCCCAGGAGGAATATCAGGAGTATGAGCCAGAGGCGTAGGGGCCCAGGAGAGCCCCCA
CCAGCAGCACAATTCTGTCCCTGTCCCTGCCCCGCCCCCCAGAGCCAGGGCTGTCCTTTGACTC
CTTCTCCCCAATCACGAGATCTTCCTTCCGCTCTGAGGCAACTCCCTCGGAGCCTGTGTTAGTG
TCTGTCCATCTGTCTGTCCTACCCGCCCGCGTCCAACCCCGGGGCGTGGACAGGGCCAGGGTTG
CGGCCGCGGCTGGGAGCCTCGCCCCTCCAGTGTTGCCTCCTCCCATCCAGCGTCTGCGCGGATG
TAGCATGTTCTATGTGTTTTTAAACGAAGATCCGAGCGACGGCTCCTCCCCGATCCCCGACAGT
GGCTCTCCAAGCGGCCCCCGGGCAGCCCCAGAGCACCCCTCCCGACTCCCATTAACCTCGAGAA
CCTTTTTTTTTTTAACCAAAACCAGGAGCCAGGCTGTGCCATGTCCCCCGCCCCCCATCCCAGC
CGGCCCGGTCCGAACGCGGGCGTCGTGTGTTGTGATTGTGGCATGGAGAGTCCCCATCCCCCCC
ATGTGAGCGTGTCCCGGGCGGGTGGGCCCGGCCGCCCCCCGAGAGTCCATGAATAAAGCTAATC
TGTCTGTAGCCAGAGCCGCACCGGCAGGGCTGGGCTGGGCGCCGGGTGGGGGCGACACGTGGCG
GCGGGTCTTCCAGGTCCCAGCCTACCCCTCTGTGCTCTTTGGGGTCTGGCACACACAGCCCAGG
TACAA

hide sequence

RefSeq Acc Id:

XM_008958046 ⟹ XP_008956294

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,701,641 - 171,711,141 (-)	NCBI
NHGRI_mPanPan1	5	169,841,180 - 169,850,680 (-)	NCBI
Mhudiblu_PPA_v0	5	171,919,201 - 171,928,672 (-)	NCBI
PanPan1.1	5	178,989,343 - 178,998,802 (-)	NCBI

Sequence:

show sequence

GCCGCCAGGGGGAGTGCTGAGCTCAGAGCTGCCGCAGCGCCGGAGCCGGAGCCGGAGCGCGCGA
GCTCGCAGGGCGCGAGGAACGAGCGGTGGCAGGCTACAAACCCGAGACCCGGGCACTGCTGCGC
TCCTGCTCAGGACCCGCGACCCGAGCGCCTGACCCCGGCCCTATCCCCCCTCCGGCCCCTAGTC
CACCCCGGCCTGGCCTAGCGGAGCCCCCGCGTCCGCCCGCCGCAGCCGCCGCTCCATCCCCAGC
CCCGGCCCCGCATCCAGGCCGCCAGGATGGACGTGTTCATGAAGGGCCTGTCCATGGCCAAGGA
GGGCGTTGTGGCAGCCGCGGAGAAAACCAAGCAGGGGGTCACCGAGGCGGCGGAGAAGACCAAG
GAGGGCGTCCTCTACGTCGGAAGCAAGACCCGAGAAGGTGTGGTACAAGGTGTGGCTTCAGTGG
CTGAAAAAACCAAGGAACAGGCCTCACATCTGGGAGGAGCTGTGTTCTCTGGGGCAGGGAACAT
CGCAGCAGCCACAGGACTGGTGAAGAGGGAGGAATTCCCTACTGATCTGAAGCCAGAGGAAGTG
GCCCAGGAAGCTGCTGAGGAGCCACTGATTGAGCCCCTGATGGAGCCAGAAGGGGAGAGTTATG
AGGACCCACCCCAGGTGAGGGGGCAGCAGGGCTGGGCGGGACTTTGGGAATCCAGGATGATTGC
TGCCATCCCTAGCTGGGGTGGGACATCCCTGGCATGACATGGTTGGGCCAGG

hide sequence

RefSeq Acc Id:

XM_008958052 ⟹ XP_008956300

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,701,641 - 171,711,148 (-)	NCBI
NHGRI_mPanPan1	5	169,841,180 - 169,850,687 (-)	NCBI
Mhudiblu_PPA_v0	5	171,919,201 - 171,928,662 (-)	NCBI
PanPan1.1	5	178,989,343 - 178,998,805 (-)	NCBI

Sequence:

show sequence

GCGGCCGCCAGGGGGAGTGCTGAGCTCAGAGCTGCCGCAGCGCCGGAGCCGGAGCCGGAGCGCG
CGAGCTCGCAGGGCGCGAGGAACGAGCGGTGGCAGGCTACAAACCCGAGACCCGGGCACTGCTG
CGCTCCTGCTCAGGACCCGCGACCCGAGCGCCTGACCCCGGCCCTATCCCCCCTCCGGCCCCTA
GTCCACCCCGGCCTGGCCTAGCGGAGCCCCCGCGTCCGCCCGCCGCAGCCGCCGCTCCATCCCC
AGCCCCGGCCCCGCATCCAGGCCGCCAGGATGGACGTGTTCATGAAGGGCCTGTCCATGGCCAA
GGAGGGCGTTGTGGCAGCCGCGGAGAAAACCAAGCAGGGGGTCACCGAGGCGGCGGAGAAGACC
AAGGAGGGCGTCCTCTACGTCGGAAGCAAGACCCGAGAAGGTGTGGTACAAGTGGCTGAAAAAA
CCAAGGAACAGGCCTCACATCTGGGAGGAGCTGTGTTCTCTGGGGCAGGGAACATCGCAGCAGC
CACAGGACTGGTGAAGAGGGAGGAATTCCCTACTGATCTGAAGCCAGAGGAAGTGGCCCAGGAA
GCTGCTGAGGAGCCACTGATTGAGCCCCTGATGGAGCCAGAAGGGGAGAGTTATGAGGACCCAC
CCCAGGTGAGGGGGCAGCAGGGCTGGGCGGGACTTTGGGAATCCAGGATGATTGCTGCCATCCC
TAGCTGGGGTGGGACATCCCTGGCATGACATGGTTGGGCCAGG

hide sequence

RefSeq Acc Id:

XM_055113042 ⟹ XP_054969017

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,700,736 - 171,711,140 (-)	NCBI
NHGRI_mPanPan1	5	169,840,275 - 169,850,678 (-)	NCBI

RefSeq Acc Id:

XM_057302421 ⟹ XP_057158404

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,701,641 - 171,710,501 (-)	NCBI
NHGRI_mPanPan1	5	169,841,180 - 169,850,128 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003806890	(Get FASTA)	NCBI Sequence Viewer
	XP_008956294	(Get FASTA)	NCBI Sequence Viewer
	XP_008956300	(Get FASTA)	NCBI Sequence Viewer
	XP_054969017	(Get FASTA)	NCBI Sequence Viewer
	XP_057158404	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000024861
	ENSPPAP00000024861.1
	ENSPPAP00000024863.1

RefSeq Acc Id:	XP_003806890 ⟸ XM_003806842
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9B721 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQAS HLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQ EYEPEA hide sequence

RefSeq Acc Id:	XP_008956300 ⟸ XM_008958052
- Peptide Label:	isoform X2
- Sequence:	show sequence MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQVAEKTKEQASHLGG AVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQVRGQQGWA GLWESRMIAAIPSWGGTSLA hide sequence

RefSeq Acc Id:	XP_008956294 ⟸ XM_008958046
- Peptide Label:	isoform X1
- Sequence:	show sequence MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQAS HLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQVRGQ QGWAGLWESRMIAAIPSWGGTSLA hide sequence

RefSeq Acc Id:

ENSPPAP00000024863 ⟸ ENSPPAT00000047689

RefSeq Acc Id:

ENSPPAP00000024861 ⟸ ENSPPAT00000047687

RefSeq Acc Id:	XP_054969017 ⟸ XM_055113042
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_057158404 ⟸ XM_057302421
- Peptide Label:	isoform X1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000035570	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000047687.1	UniProtKB/TrEMBL
	ENSPPAT00000047689.1	UniProtKB/TrEMBL
Gene3D-CATH	Helix hairpin bin	UniProtKB/TrEMBL
InterPro	Synuclein	UniProtKB/TrEMBL
	Synuclein_beta	UniProtKB/TrEMBL
KEGG Report	pps:100988063	UniProtKB/TrEMBL
NCBI Gene	SNCB	ENTREZGENE
PANTHER	PTHR13820	UniProtKB/TrEMBL
	PTHR13820:SF4	UniProtKB/TrEMBL
Pfam	Synuclein	UniProtKB/TrEMBL
PRINTS	BSYNUCLEIN	UniProtKB/TrEMBL
	SYNUCLEIN	UniProtKB/TrEMBL
Superfamily-SCOP	Synuclein	UniProtKB/TrEMBL
UniProt	A0A2R9B5J7_PANPA	UniProtKB/TrEMBL
	A0A2R9B721	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM