DSG1 (desmoglein 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: DSG1 (desmoglein 1) Pan paniscus
Analyze
Symbol: DSG1
Name: desmoglein 1
RGD ID: 11745471
Description: ENCODES a protein that exhibits gamma-catenin binding (ortholog); INVOLVED IN maternal process involved in female pregnancy (ortholog); protein stabilization (ortholog); response to progesterone (ortholog); ASSOCIATED WITH allergic disease (ortholog); aortic valve disease (ortholog); bicuspid aortic valve disease (ortholog); FOUND IN apical plasma membrane (ortholog); cell-cell junction (ortholog); cytoplasmic side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: desmoglein-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11828,140,132 - 28,171,831 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1828,078,131 - 28,175,803 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01824,543,061 - 24,579,085 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
DSG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11828,140,132 - 28,171,831 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1828,078,131 - 28,175,803 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01824,543,061 - 24,579,085 (+)NCBIMhudiblu_PPA_v0panPan3
DSG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1831,318,160 - 31,359,246 (+)EnsemblGRCh38hg38GRCh38
GRCh381831,318,160 - 31,359,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371828,898,123 - 28,939,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361827,152,050 - 27,191,392 (+)NCBINCBI36hg18NCBI36
Build 341827,152,049 - 27,190,453NCBI
Celera1825,705,178 - 25,744,520 (+)NCBI
Cytogenetic Map18q12.1NCBI
HuRef1825,754,044 - 25,793,387 (+)NCBIHuRef
CHM1_11828,825,336 - 28,866,478 (+)NCBICHM1_1
Dsg1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391820,443,930 - 20,476,410 (+)NCBIGRCm39mm39
GRCm39 Ensembl1820,443,868 - 20,476,407 (+)Ensembl
GRCm381820,310,873 - 20,343,353 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1820,310,811 - 20,343,350 (+)EnsemblGRCm38mm10GRCm38
MGSCv371820,469,374 - 20,501,854 (+)NCBIGRCm37mm9NCBIm37
MGSCv361820,453,821 - 20,486,363 (+)NCBImm8
Celera1820,815,287 - 20,847,880 (+)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1811.29NCBI
Dsg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21811,674,687 - 11,705,383 (+)NCBI
Rnor_6.0 Ensembl1812,008,759 - 12,038,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01812,008,301 - 12,040,337 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01811,807,285 - 11,838,204 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,127,180 - 12,156,469 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11812,096,380 - 12,182,381 (+)NCBI
Celera1811,690,076 - 11,721,312 (+)NCBICelera
Cytogenetic Map18p12NCBI
Dsg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540218,668,196 - 18,700,630 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540218,668,717 - 18,704,329 (+)NCBIChiLan1.0ChiLan1.0
DSG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl758,102,113 - 58,193,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1758,159,283 - 58,239,018 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dsg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366821,854,637 - 1,889,426 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6115,237,677 - 115,276,646 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16115,237,836 - 115,272,944 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26107,865,594 - 107,900,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DSG1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11849,372,261 - 49,408,818 (-)NCBI
ChlSab1.1 Ensembl1849,375,262 - 49,406,742 (-)Ensembl
Dsg1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247701,514,978 - 1,551,437 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003830259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000061359   ⟹   ENSPPAP00000038456
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1828,078,131 - 28,175,803 (+)Ensembl
RefSeq Acc Id: XM_003830259   ⟹   XP_003830307
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11828,140,132 - 28,171,831 (+)NCBI
Mhudiblu_PPA_v01824,543,061 - 24,579,085 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830307 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003830307   ⟸   XM_003830259
- Sequence:
RefSeq Acc Id: ENSPPAP00000038456   ⟸   ENSPPAT00000061359
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041927 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000038456 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061359 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin_binding_dom_sf UniProtKB/TrEMBL
  Desmoglein UniProtKB/TrEMBL
  Desmosomal_cadherin UniProtKB/TrEMBL
KEGG Report pps:100994814 UniProtKB/TrEMBL
NCBI Gene DSG1 ENTREZGENE
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
  DESMOCADHERN UniProtKB/TrEMBL
  DESMOGLEIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A2R9C939_PANPA UniProtKB/TrEMBL