TMED8 (transmembrane p24 trafficking protein family member 8) - Rat Genome Database

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Gene: TMED8 (transmembrane p24 trafficking protein family member 8) Pan paniscus
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Symbol: TMED8
Name: transmembrane p24 trafficking protein family member 8
RGD ID: 11745309
Description: ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1C (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane emp24 protein transport domain containing 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,418,890 - 78,461,242 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,635,394 - 77,677,746 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,888,235 - 57,930,615 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,089,637 - 77,132,037 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,096,398 - 77,132,037 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
TMED8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,418,890 - 78,461,242 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,635,394 - 77,677,746 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,888,235 - 57,930,615 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,089,637 - 77,132,037 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,096,398 - 77,132,037 (-)Ensemblpanpan1.1panPan2
TMED8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,335,021 - 77,377,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,335,029 - 77,377,094 (-)EnsemblGRCh38hg38GRCh38
GRCh371477,801,364 - 77,843,437 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,877,867 - 76,913,149 (-)NCBINCBI36Build 36hg18NCBI36
Build 341476,877,866 - 76,913,149NCBI
Celera1457,846,691 - 57,881,972 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,974,194 - 58,009,463 (-)NCBIHuRef
CHM1_11477,747,564 - 77,782,831 (-)NCBICHM1_1
T2T-CHM13v2.01471,544,384 - 71,586,469 (-)NCBIT2T-CHM13v2.0
Tmed8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,195,547 - 87,247,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,213,011 - 87,247,228 (-)EnsemblGRCm39 Ensembl
GRCm381287,166,242 - 87,200,457 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,166,237 - 87,200,454 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,507,192 - 88,541,179 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,055,345 - 88,089,332 (-)NCBIMGSCv36mm8
Celera1288,630,768 - 88,664,814 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.36NCBI
Tmed8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,537,921 - 112,572,199 (-)NCBIGRCr8
mRatBN7.26106,806,973 - 106,841,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,810,420 - 106,843,216 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06111,188,938 - 111,222,866 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,194,951 - 111,222,858 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,473,103 - 120,506,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6104,628,254 - 104,662,575 (-)NCBICelera
Cytogenetic Map6q31NCBI
Tmed8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,246,301 - 1,272,815 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,246,301 - 1,273,113 (-)NCBIChiLan1.0ChiLan1.0
TMED8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,149,099 - 50,163,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,156,060 - 50,164,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,836,775 - 49,869,837 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,382,641 - 50,415,947 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,387,795 - 50,415,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,045,477 - 50,078,545 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,068,840 - 50,101,841 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,466,520 - 50,499,588 (-)NCBIUU_Cfam_GSD_1.0
Tmed8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,892,367 - 25,911,257 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,165,874 - 6,176,595 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,159,119 - 6,176,584 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMED8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,411,264 - 100,449,298 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,411,259 - 100,449,350 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,507,882 - 106,540,567 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMED8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,595,024 - 54,636,235 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605342,781,717 - 42,828,610 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmed8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,526,414 - 24,562,599 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,526,410 - 24,569,901 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000042114   ⟹   ENSPPAP00000019354
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1477,096,398 - 77,132,037 (-)Ensembl
RefSeq Acc Id: XM_003808866   ⟹   XP_003808914
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21578,418,890 - 78,461,242 (-)NCBI
NHGRI_mPanPan11477,635,394 - 77,677,746 (-)NCBI
Mhudiblu_PPA_v01457,888,235 - 57,930,615 (-)NCBI
PanPan1.11477,089,637 - 77,132,037 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008960977   ⟹   XP_008959225
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21578,418,890 - 78,461,242 (-)NCBI
NHGRI_mPanPan11477,635,394 - 77,677,746 (-)NCBI
Mhudiblu_PPA_v01457,893,624 - 57,930,615 (-)NCBI
PanPan1.11477,089,637 - 77,132,037 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055097319   ⟹   XP_054953294
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21578,418,890 - 78,435,636 (-)NCBI
NHGRI_mPanPan11477,635,394 - 77,652,120 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003808914 (Get FASTA)   NCBI Sequence Viewer  
  XP_008959225 (Get FASTA)   NCBI Sequence Viewer  
  XP_054953294 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019354.1
RefSeq Acc Id: XP_003808914   ⟸   XM_003808866
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008959225   ⟸   XM_008960977
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000019354   ⟸   ENSPPAT00000042114
RefSeq Acc Id: XP_054953294   ⟸   XM_055097319
- Peptide Label: isoform X3
Protein Domains
GOLD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032854 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042114.1 UniProtKB/TrEMBL
Gene3D-CATH GOLD domain UniProtKB/TrEMBL
InterPro GOLD_dom UniProtKB/TrEMBL
  GOLD_dom_sf UniProtKB/TrEMBL
NCBI Gene TMED8 ENTREZGENE
PANTHER LD35087P UniProtKB/TrEMBL
  PROTEIN TMED8 UniProtKB/TrEMBL
Pfam GOLD_2 UniProtKB/TrEMBL
PROSITE GOLD UniProtKB/TrEMBL
Superfamily-SCOP SSF101576 UniProtKB/TrEMBL
UniProt A0A2R9AWK0_PANPA UniProtKB/TrEMBL