KASH5 (KASH domain containing 5) - Rat Genome Database

Name: KASH5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: KASH5 (KASH domain containing 5) Pan paniscus

Analyze

Symbol:

KASH5

Name:

KASH domain containing 5

RGD ID:

11744772

Description:

ENCODES a protein that exhibits dynein complex binding (inferred); identical protein binding (inferred); INVOLVED IN chromosome localization to nuclear envelope involved in homologous chromosome segregation (ortholog); double-strand break repair via homologous recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH azoospermia (ortholog); developmental and epileptic encephalopathy 12 (ortholog); genetic disease (ortholog); FOUND IN chromosome, telomeric region (inferred); lateral element (inferred); meiotic nuclear membrane microtubule tethering complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CCDC155; coiled-coil domain containing 155

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	55,504,624 - 55,535,099 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	57,425,736 - 57,455,406 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	46,402,586 - 46,432,002 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	55,325,640 - 55,353,721 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	55,325,640 - 55,353,721 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

azoospermia (ISO)

developmental and epileptic encephalopathy 12 (ISO)

genetic disease (ISO)

hereditary breast ovarian cancer syndrome (ISO)

primary ovarian insufficiency 16 (ISO)

Primary Ovarian Insufficiency 22 (ISO)

Spermatogenic Failure 88 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IEA)

chromosome localization to nuclear envelope involved in homologous chromosome segregation (IEA,ISO)

double-strand break repair via homologous recombination (IEA,ISO)

homologous chromosome pairing at meiosis (IEA,ISO)

meiotic telomere clustering (IEA,ISO)

oogenesis (IEA,ISO)

spermatogenesis (IEA,ISO)

spindle assembly (IEA)

spindle localization (IEA)

telomere localization (IEA)

Cellular Component

chromosome, telomeric region (IEA)

lateral element (IEA)

meiotic nuclear membrane microtubule tethering complex (IEA)

meiotic spindle pole (IEA)

nuclear outer membrane (IEA)

Molecular Function

dynein complex binding (IEA)

identical protein binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

KASH5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	55,504,624 - 55,535,099 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	57,425,736 - 57,455,406 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	46,402,586 - 46,432,002 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	55,325,640 - 55,353,721 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	55,325,640 - 55,353,721 (+)	Ensembl	panpan1.1		panPan2

KASH5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	49,388,249 - 49,417,990 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	49,388,219 - 49,417,990 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	49,891,506 - 49,921,247 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	54,583,318 - 54,613,058 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	46,759,093 - 46,788,876 (+)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	46,268,082 - 46,297,866 (+)	NCBI		HuRef
CHM1_1	19	49,893,262 - 49,923,194 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	52,385,679 - 52,415,421 (+)	NCBI		T2T-CHM13v2.0

Kash5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	44,833,043 - 44,854,344 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	44,833,048 - 44,854,316 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	45,183,619 - 45,204,919 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,183,624 - 45,204,892 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	52,439,046 - 52,460,262 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	45,051,718 - 45,072,934 (-)	NCBI		MGSCv36	mm8
Celera	7	40,639,569 - 40,660,783 (-)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.17	NCBI

Kash5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	104,805,248 - 104,827,720 (-)	NCBI		GRCr8
mRatBN7.2	1	95,668,918 - 95,691,353 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,668,886 - 95,691,368 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	101,180,497 - 101,203,048 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,180,657 - 101,198,801 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	102,245,370 - 102,267,683 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,660,143 - 95,681,984 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	89,927,287 - 89,949,915 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Kash5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955559	1,416,844 - 1,438,451 (-)	NCBI	ChiLan1.0	ChiLan1.0

KASH5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	107,074,010 - 107,114,460 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	107,074,010 - 107,097,762 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	106,657,279 - 106,681,125 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	107,594,087 - 107,617,939 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	107,594,087 - 107,617,934 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	107,267,073 - 107,290,886 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	106,909,642 - 106,933,428 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	107,750,294 - 107,774,134 (-)	NCBI		UU_Cfam_GSD_1.0

Kash5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	21,655,156 - 21,680,810 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	3,275,669 - 3,297,605 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	3,268,824 - 3,300,689 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KASH5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,477,058 - 54,500,887 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	54,476,989 - 54,501,099 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	50,205,478 - 50,230,015 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KASH5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	42,561,606 - 42,599,442 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	22,496,832 - 22,527,316 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kash5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	4,783,766 - 4,803,325 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	4,783,593 - 4,806,025 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003814319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008966941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008966942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034946177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034946178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034946179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063600499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000057851 ⟹ ENSPPAP00000034966

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	55,325,640 - 55,353,721 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000057859 ⟹ ENSPPAP00000034974

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	55,328,309 - 55,353,343 (+)	Ensembl

RefSeq Acc Id:

XM_003814319 ⟹ XP_003814367

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	55,504,624 - 55,535,099 (+)	NCBI
NHGRI_mPanPan1	19	57,425,736 - 57,455,406 (+)	NCBI
Mhudiblu_PPA_v0	19	46,402,586 - 46,431,067 (+)	NCBI
PanPan1.1	19	55,325,640 - 55,353,721 (+)	NCBI

Sequence:

show sequence

CTCCTTTTGCTTTTTCTGGCGGGAAAAGCTCACGCGCACCTCCCCCAACTCAACTGCCGTTTGT
CGTTCGTGGATGTCCGTTGTGTCCTGAGACTAGGACGTGGCTCCAGGAGTGCTCGGGCCAGCTG
GTCCTTTTCCCATCCCTCCCCATGAAGGAGGGAGGCTGGTAGCTTTGCCAGCAGCTGCGCCGCG
GCAGGGGTGGCCCATGGACCTGCCCGAGGGCCCGGTGGGTGGCCCCACTGCGGAAATGTACCTC
CAGGAGCGGCCTGAGGAGGCAAGGCTGGGAATGCCGGTCAGCTTGGAGGAGCAAATACTCAACT
CCACGTTCGAAGCTTGTGACCCTCAGAGGACAGGCACTGTGGCTGTGGCCCAGGTGCTGGCCTA
CCTGGAGGCTGTGACAGGCCAGGGCCCCCAGGATGCACGCCTCCAAACATTGGCCAACAGCCTG
GACCCCAATGGGGAGGGCCCTAAGGCCACTGTGGACTTGGACACTTTCCTGGTTGTCATGCGTG
ACTGGATTGCTGCCTGTCAACTACATGGGGGATTAGAGCCGGAAGAGGAGACCGCCTTCCAGGG
AGCCCTGACCTCCCGGCAACTGCCATCTGGATGCCCAGAAGCTGAGGAGCCAGCCAACCTGGAG
AGCTTCGGAGGCGAAGACCCCAGACCCGAGCTACAAGCCACAGCTGACCTGCTGAGCAGCCTGG
AGGACCTGGAGCTCAGCAACCGACGTCTGGTTGGGGAGAATGCCAAACTGCAGCGGAGCATGGA
GACAGCTGAGGAGGGGTCAGCACGCCTTGGGGAGGAAATCTTGGCTCTGCGTAAGCAGCTTCAC
AGCACCCAGCAGGCCCTGCAGTTTGCCAAGGCCATGGATGAGGAGCTGGAGGACCTGAAGACTC
TGGCCAGGAGCCTGGAGGAACAGAATCGCAGCCTTCTGGCCCAAGCCCGGCAGGCGGAAAAGGA
GCAGCAGCATCTGGTGGCTGAGATGGAGACTCTGCAGGAGGAGAACGGGAAGCTGCTTGCCGAG
CGGGATGGAGTGAAGAAGAGAAGTCAGGAGCTGGCCATGGAGAAGGACACTTTGAAGCGGCAGC
TCTTTGAGTGTGAACACCTCATTTGCCAACGAGACACCATCCTCTCTGAGCGCACTCGCCATGT
GGAGAGCCTGGCCCAGACCCTGGAAGAATACAGAGTGACGACGCAGGAACTGAGGCTGGAGATT
TCACGACTGGAGGAGCAGCTGAGTCAGACCTATGAGGGGCCCGATGAGCTACCTGAAGGGGCCC
AGCTGAGAAGAGTGGGCTGGACCCAGCTGCTACCCCCATCGCTGGGCTTGGAGATCGAGGCCAT
TCAACAGAAACAGGAAGTGGCAACTGCTGATCTCTCCAACCCTCTGTGTGGGCTGTGGCAGTGG
GAGGAAGTCATCCATGAGACCAGTGAGGAAACTGAGTTTCCATCTGAAGCCCCAGCTGGGGGAC
AGAGAAACTTCCAGGGAGAGCCAGCGCACCCTGAAGAAGGAAGGAAGGAGCCATCCATGTGGTT
GACCAGAAGAGAGGAAGAGGAGGATGCAGAGAGCCAGGTCACGGCTGATCTCCCTATCCCTCTA
GGAGACCCTCACCCTGGAGACATCCCAGAAAACCCTCCAGAGAGACCTGCGCGGCGGGAACTCC
AGCAAGCCCTGGTGCCTGTGATGAAAGAGCTGGTCCCAATCAGGAGGAGGGCCTGGGGCCAGCT
CTGCCTGCCCCCACAGCGGCTCAGAGTCACTCAACATCCACTGATCCCAGCTCCTGTCCTGGGC
CTGCTGCTGCTGCTGCTGCTCTCTGTCCTGCTGCTTGGCCCGTCCCCACCTCCCACCTGGCCCC
ACCTCCAGCTCTGCTACCTCCAGCCCCCTCCAGTGTGAGAGGCTCTACTTGCCCCTCAGAGCAG
TGTCTAGCTCAATAAATCCCCTGGCCCTCTCTCCACTGGGATCCCCGTTGTTAGTCCACTGTTG
CGCAGGCTTACCCTAGATAGAGTACAGGGGATCCACATCCCTGTATTTTTATGTGAAGTCTCCT
AGTTTTTTAATGTTGACATTTCTTAACAATAGCAAAACTCCCCCAGTAATGGATTAAGCACTAA
GGATTATTCCCTCACAAAACAAGCCTGGCGAGGGCAGCTGTGGGCACACAGCTAAGTCTCGGTT
GCCTTGGGATCAGGGCCTCAGTGATTCTCCTGTCCCCTCCCTCATGCTCAGGAGTTGGCAGTTG
TAGCTTCCTACATCACATCTGTGGGAGACGGAAATTTCTTCCTTCCTTTTTATAAAGAGAGGCA
GTAGCCTCAGTGTGCAGTGGGTAGATTCAAATCATATTCATAATAAAAGAGAAGCAGTTGCCTG
CCCAGAGCCA

hide sequence

RefSeq Acc Id:

XM_008966941 ⟹ XP_008965189

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	55,504,624 - 55,535,099 (+)	NCBI
NHGRI_mPanPan1	19	57,425,972 - 57,455,406 (+)	NCBI
Mhudiblu_PPA_v0	19	46,402,608 - 46,432,002 (+)	NCBI
PanPan1.1	19	55,325,640 - 55,353,720 (+)	NCBI

Sequence:

show sequence

CTCCTTTTGCTTTTTCTGGCGGGAAAAGCTCACGCGCACCTCCCCCAACTCAACTGCCGTTTGT
CGTTCGTGGATGTCCGTTGTGTCCTGAGACTAGGACGTGGCTCCAGGAGTGCTCGGGCCAGCTG
GTCCTTTTCCCATCCCTCCCCATGAAGGAGGGAGGCTGGTAGCTTTGCCAGCAGCTGCGCCGCG
GCAGGGGTGGCCCATGGACCTGCCCGAGGGCCCGGTGGGTGGCCCCACTGCGGAAATGTACCTC
CAGGAGCGGCCTGAGGAGGCAAGGCTGGGAATGCCGGTCAGCTTGGAGGAGCAAATACTCAACT
CCACGTTCGAAGCTTGTGACCCTCAGAGGACAGGCACTGTGGCTGTGGCCCAGGTGCTGGCCTA
CCTGGAGGCTGTGACAGGCCAGGGCCCCCAGGATGCACGCCTCCAAACATTGGCCAACAGCCTG
GACCCCAATGGGGAGGGCCCTAAGGCCACTGTGGACTTGGACACTTTCCTGGTTGTCATGCGTG
ACTGGATTGCTGCCTGTCAACTACATGGGGGATTAGAGCCGGAAGAGGAGACCGCCTTCCAGGG
AGCCCTGACCTCCCGGCAACTGCCATCTGGATGCCCAGAAGCTGAGGAGCCAGCCAACCTGGAG
AGCTTCGGAGGCGAAGACCCCAGACCCGAGCTACAAGCCACAGCTGACCTGCTGAGCAGCCTGG
AGGACCTGGAGCTCAGCAACCGACGTCTGGTTGGGGAGAATGCCAAACTGCAGCGGAGCATGGA
GACAGCTGAGGAGGGGTCAGCACGCCTTGGGGAGGAAATCTTGGCTCTGCGTAAGCAGCTTCAC
AGCACCCAGCAGGCCCTGCAGTTTGCCAAGGCCATGGATGAGGAGCTGGAGGACCTGAAGACTC
TGGCCAGGAGCCTGGAGGAACAGAATCGCAGCCTTCTGGCCCAAGCCCGGCAGGCGGAAAAGGA
GCAGCAGCATCTGGTGGCTGAGATGGAGACTCTGCAGGAGGAGAACGGGAAGCTGCTTGCCGAG
CGGGATGGAGTGAAGAAGAGAAGTCAGGAGCTGGCCATGGAGAAGGACACTTTGAAGCGGCAGC
TCTTTGAGTGTGAACACCTCATTTGCCAACGAGACACCATCCTCTCTGAGCGCACTCGCCATGT
GGAGAGCCTGGCCCAGACCCTGGAAGAATACAGAGTGACGACGCAGGAACTGAGGCTGGAGATT
TCACGACTGGAGGAGCAGCTGAGTCAGACCTATGAGGGGCCCGATGAGCTACCTGAAGGGGCCC
AGCTGAGAAGAGTGGGCTGGACCCAGCTGCTACCCCCATCGCTGGGCTTGGAGATCGAGGCCAT
TCAACAGAAACAGGAAGTGGCAACTGCTGATCTCTCCAACCCTCTGTGTGGGCTGTGGCAGTGG
GAGGAAGTCATCCATGAGACCAGTGAGGAAACTGAGTTTCCATCTGAAGCCCCAGCTGGGGGAC
AGAGAAACTTCCAGGGAGAGCCAGCGCACCCTGAAGAAGGAAGGAAGGAGCCATCCATGTGGTT
GACCAGAAGAGAGGAAGAGGAGGATGCAGAGAGCCAGGTCACGGCTGATCTCCCTATCCCTCTA
GGAGACCCTCACCCTGGAGACATCCCAGAAAACCCTCCAGAGAGCAGACCTGCGCGGCGGGAAC
TCCAGCAAGCCCTGGTGCCTGTGATGAAAGAGCTGGTCCCAATCAGGAGGAGGGCCTGGGGCCA
GCTCTGCCTGCCCCCACAGCGGCTCAGAGTCACTCAACATCCACTGATCCCAGCTCCTGTCCTG
GGCCTGCTGCTGCTGCTGCTGCTCTCTGTCCTGCTGCTTGGCCCGTCCCCACCTCCCACCTGGC
CCCACCTCCAGCTCTGCTACCTCCAGCCCCCTCCAGTGTGAGAGGCTCTACTTGCCCCTCAGAG
CAGTGTCTAGCTCAATAAATCCCCTGGCCCTCTCTCCACTGGGATCCCCGTTGTTAGTCCACTG
TTGCGCAGGCTTACCCTAGATAGAGTACAGGGGATCCACATCCCTGTATTTTTATGTGAAGTCT
CCTAGTTTTTTAATGTTGACATTTCTTAACAATAGCAAAACTCCCCCAGTAATGGATTAAGCAC
TAAGGATTATTCCCTCACAAAACAAGCCTGGCGAGGGCAGCTGTGGGCACACAGCTAAGTCTCG
GTTGCCTTGGGATCAGGGCCTCAGTGATTCTCCTGTCCCCTCCCTCATGCTCAGGAGTTGGCAG
TTGTAGCTTCCTACATCACATCTGTGGGAGACGGAAATTTCTTCCTTCCTTTTTATAAAGAGAG
GCAGTAGCCTCAGTGTGCAGTGGGTAGATTCAAATCATATTCATAATAAAAGAGAAGCAGTTGC
CTGCCCAGAGCC

hide sequence

RefSeq Acc Id:

XM_034946177 ⟹ XP_034802068

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	55,505,933 - 55,535,099 (+)	NCBI
NHGRI_mPanPan1	19	57,426,122 - 57,455,406 (+)	NCBI
Mhudiblu_PPA_v0	19	46,403,997 - 46,432,002 (+)	NCBI

RefSeq Acc Id:

XM_055103548 ⟹ XP_054959523

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	55,504,624 - 55,535,099 (+)	NCBI
NHGRI_mPanPan1	19	57,426,057 - 57,455,406 (+)	NCBI

RefSeq Acc Id:

XM_055103549 ⟹ XP_054959524

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	55,504,624 - 55,535,099 (+)	NCBI
NHGRI_mPanPan1	19	57,426,062 - 57,455,406 (+)	NCBI

RefSeq Acc Id:

XM_055103550 ⟹ XP_054959525

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	55,506,169 - 55,535,099 (+)	NCBI
NHGRI_mPanPan1	19	57,426,358 - 57,455,406 (+)	NCBI

RefSeq Acc Id:

XM_063600499 ⟹ XP_063456569

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	55,505,895 - 55,535,099 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003814367	(Get FASTA)	NCBI Sequence Viewer
	XP_008965189	(Get FASTA)	NCBI Sequence Viewer
	XP_034802068	(Get FASTA)	NCBI Sequence Viewer
	XP_054959523	(Get FASTA)	NCBI Sequence Viewer
	XP_054959524	(Get FASTA)	NCBI Sequence Viewer
	XP_054959525	(Get FASTA)	NCBI Sequence Viewer
	XP_063456569	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000034966
	ENSPPAP00000034966.1
	ENSPPAP00000034974.1

RefSeq Acc Id:	XP_003814367 ⟸ XM_003814319
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BZR6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLPEGPVGGPTAEMYLQERPEEARLGMPVSLEEQILNSTFEACDPQRTGTVAVAQVLAYLEAV TGQGPQDARLQTLANSLDPNGEGPKATVDLDTFLVVMRDWIAACQLHGGLEPEEETAFQGALTS RQLPSGCPEAEEPANLESFGGEDPRPELQATADLLSSLEDLELSNRRLVGENAKLQRSMETAEE GSARLGEEILALRKQLHSTQQALQFAKAMDEELEDLKTLARSLEEQNRSLLAQARQAEKEQQHL VAEMETLQEENGKLLAERDGVKKRSQELAMEKDTLKRQLFECEHLICQRDTILSERTRHVESLA QTLEEYRVTTQELRLEISRLEEQLSQTYEGPDELPEGAQLRRVGWTQLLPPSLGLEIEAIQQKQ EVATADLSNPLCGLWQWEEVIHETSEETEFPSEAPAGGQRNFQGEPAHPEEGRKEPSMWLTRRE EEEDAESQVTADLPIPLGDPHPGDIPENPPERPARRELQQALVPVMKELVPIRRRAWGQLCLPP QRLRVTQHPLIPAPVLGLLLLLLLSVLLLGPSPPPTWPHLQLCYLQPPPV hide sequence

RefSeq Acc Id:

XP_008965189 ⟸ XM_008966941

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDLPEGPVGGPTAEMYLQERPEEARLGMPVSLEEQILNSTFEACDPQRTGTVAVAQVLAYLEAV
TGQGPQDARLQTLANSLDPNGEGPKATVDLDTFLVVMRDWIAACQLHGGLEPEEETAFQGALTS
RQLPSGCPEAEEPANLESFGGEDPRPELQATADLLSSLEDLELSNRRLVGENAKLQRSMETAEE
GSARLGEEILALRKQLHSTQQALQFAKAMDEELEDLKTLARSLEEQNRSLLAQARQAEKEQQHL
VAEMETLQEENGKLLAERDGVKKRSQELAMEKDTLKRQLFECEHLICQRDTILSERTRHVESLA
QTLEEYRVTTQELRLEISRLEEQLSQTYEGPDELPEGAQLRRVGWTQLLPPSLGLEIEAIQQKQ
EVATADLSNPLCGLWQWEEVIHETSEETEFPSEAPAGGQRNFQGEPAHPEEGRKEPSMWLTRRE
EEEDAESQVTADLPIPLGDPHPGDIPENPPESRPARRELQQALVPVMKELVPIRRRAWGQLCLP
PQRLRVTQHPLIPAPVLGLLLLLLLSVLLLGPSPPPTWPHLQLCYLQPPPV

hide sequence

RefSeq Acc Id:	XP_034802068 ⟸ XM_034946177
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSPPAP00000034974 ⟸ ENSPPAT00000057859

RefSeq Acc Id:

ENSPPAP00000034966 ⟸ ENSPPAT00000057851

RefSeq Acc Id:	XP_054959523 ⟸ XM_055103548
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054959524 ⟸ XM_055103549
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BZR6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054959525 ⟸ XM_055103550
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BZR6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063456569 ⟸ XM_063600499
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BZR6 (UniProtKB/TrEMBL)

Protein Domains

KASH5-like coiled-coil Protein KASH5 EF-hand-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000040313	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000057851.1	UniProtKB/TrEMBL
	ENSPPAT00000057859.1	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	KASH5	UniProtKB/TrEMBL
	KASH5_coiled-coil	UniProtKB/TrEMBL
	KASH5_EF-hand-like_dom	UniProtKB/TrEMBL
KEGG Report	pps:100971321	UniProtKB/TrEMBL
NCBI Gene	CCDC155	ENTREZGENE
PANTHER	PROTEIN KASH5	UniProtKB/TrEMBL
	PTHR47300	UniProtKB/TrEMBL
Pfam	EF-hand_9	UniProtKB/TrEMBL
	KASH_CCD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A2R9BZR6	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9C9A2_PANPA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-02-04	KASH5	KASH domain containing 5	CCDC155	coiled-coil domain containing 155	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM