SPTAN1 (spectrin alpha, non-erythrocytic 1) - Rat Genome Database
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Gene: SPTAN1 (spectrin alpha, non-erythrocytic 1) Pan paniscus
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Symbol: SPTAN1
Name: spectrin alpha, non-erythrocytic 1
RGD ID: 11744135
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); spectrin binding (ortholog); syntaxin binding (ortholog); INVOLVED IN actin cytoskeleton reorganization (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); cerebellar hypoplasia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cortical cytoskeleton (ortholog); cuticular plate (ortholog); fascia adherens (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: spectrin alpha chain, non-erythrocytic 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,341,739 - 128,422,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,341,739 - 128,422,971 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0999,674,819 - 99,755,973 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
SPTAN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,341,739 - 128,422,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,341,739 - 128,422,971 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0999,674,819 - 99,755,973 (+)NCBIMhudiblu_PPA_v0panPan3
SPTAN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9128,552,558 - 128,633,662 (+)EnsemblGRCh38hg38GRCh38
GRCh389128,552,564 - 128,633,662 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379131,314,866 - 131,395,941 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,354,687 - 130,435,762 (+)NCBINCBI36hg18NCBI36
Build 349128,394,439 - 128,475,426NCBI
Celera9101,965,660 - 102,046,740 (+)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9100,926,750 - 101,007,765 (+)NCBIHuRef
CHM1_19131,465,810 - 131,546,871 (+)NCBICHM1_1
Sptan1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,855,572 - 29,921,463 (+)NCBIGRCm39mm39
GRCm39 Ensembl229,855,572 - 29,921,463 (+)Ensembl
GRCm38229,965,560 - 30,031,451 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,965,560 - 30,031,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv37229,821,080 - 29,886,971 (+)NCBIGRCm37mm9NCBIm37
MGSCv36229,787,569 - 29,853,460 (+)NCBImm8
Celera229,669,500 - 29,735,203 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map220.93NCBI
Sptan1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,241,164 - 13,306,047 (+)NCBI
Rnor_6.0 Ensembl38,534,440 - 8,599,260 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.038,534,437 - 8,599,259 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0313,878,433 - 13,950,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.438,956,380 - 9,021,831 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.138,956,679 - 9,022,131 (+)NCBI
Celera38,018,277 - 8,083,081 (+)NCBICelera
Cytogenetic Map3p12NCBI
Sptan1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,016,510 - 1,076,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,016,510 - 1,076,499 (+)NCBIChiLan1.0ChiLan1.0
SPTAN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl954,953,747 - 55,015,376 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1954,953,751 - 55,015,475 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Sptan1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648716,071,043 - 16,142,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTAN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,936,025 - 269,002,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,936,120 - 269,002,261 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,959,613 - 303,025,990 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPTAN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,503,752 - 9,585,297 (-)NCBI
ChlSab1.1 Ensembl129,503,367 - 9,585,268 (-)Ensembl
Sptan1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247606,331,554 - 6,388,953 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000050434   ⟹   ENSPPAP00000027592
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,341,739 - 128,422,971 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050443   ⟹   ENSPPAP00000027601
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,341,739 - 128,422,968 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050449   ⟹   ENSPPAP00000027607
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,341,739 - 128,422,968 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050458   ⟹   ENSPPAP00000027616
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,341,771 - 128,422,971 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050479   ⟹   ENSPPAP00000027637
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,354,934 - 128,422,643 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050495   ⟹   ENSPPAP00000027653
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,355,809 - 128,422,643 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050543   ⟹   ENSPPAP00000027700
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,403,925 - 128,422,643 (+)Ensembl
RefSeq Acc Id: XM_003822333   ⟹   XP_003822381
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.19128,341,739 - 128,422,968 (+)NCBI
Mhudiblu_PPA_v0999,674,843 - 99,755,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008975884   ⟹   XP_008974132
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.19128,341,739 - 128,422,971 (+)NCBI
Mhudiblu_PPA_v0999,674,819 - 99,755,973 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008975886   ⟹   XP_008974134
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.19128,341,739 - 128,422,971 (+)NCBI
Mhudiblu_PPA_v0999,674,819 - 99,755,973 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034929198   ⟹   XP_034785089
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0999,677,608 - 99,755,973 (+)NCBI
RefSeq Acc Id: XM_034929199   ⟹   XP_034785090
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0999,677,605 - 99,755,973 (+)NCBI
RefSeq Acc Id: XM_034929200   ⟹   XP_034785091
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0999,677,608 - 99,755,973 (+)NCBI
RefSeq Acc Id: XM_034929201   ⟹   XP_034785092
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0999,674,837 - 99,755,973 (+)NCBI
RefSeq Acc Id: XM_034929202   ⟹   XP_034785093
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0999,677,605 - 99,755,973 (+)NCBI
RefSeq Acc Id: XM_034929203   ⟹   XP_034785094
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0999,674,837 - 99,755,973 (+)NCBI
RefSeq Acc Id: XM_034929204   ⟹   XP_034785095
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0999,674,843 - 99,755,973 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003822381   ⟸   XM_003822333
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008974134   ⟸   XM_008975886
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008974132   ⟸   XM_008975884
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_034785092   ⟸   XM_034929201
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034785094   ⟸   XM_034929203
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034785095   ⟸   XM_034929204
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034785090   ⟸   XM_034929199
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034785093   ⟸   XM_034929202
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034785089   ⟸   XM_034929198
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034785091   ⟸   XM_034929200
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000027700   ⟸   ENSPPAT00000050543
RefSeq Acc Id: ENSPPAP00000027592   ⟸   ENSPPAT00000050434
RefSeq Acc Id: ENSPPAP00000027653   ⟸   ENSPPAT00000050495
RefSeq Acc Id: ENSPPAP00000027601   ⟸   ENSPPAT00000050443
RefSeq Acc Id: ENSPPAP00000027616   ⟸   ENSPPAT00000050458
RefSeq Acc Id: ENSPPAP00000027607   ⟸   ENSPPAT00000050449
RefSeq Acc Id: ENSPPAP00000027637   ⟸   ENSPPAT00000050479
Protein Domains
EF-hand   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000027592 UniProtKB/TrEMBL
  ENSPPAP00000027601 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000027607 UniProtKB/TrEMBL
  ENSPPAP00000027616 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000027637 UniProtKB/TrEMBL
  ENSPPAP00000027653 UniProtKB/TrEMBL
  ENSPPAP00000027700 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050434 UniProtKB/TrEMBL
  ENSPPAT00000050443 UniProtKB/TrEMBL
  ENSPPAT00000050449 UniProtKB/TrEMBL
  ENSPPAT00000050458 UniProtKB/TrEMBL
  ENSPPAT00000050479 UniProtKB/TrEMBL
  ENSPPAT00000050495 UniProtKB/TrEMBL
  ENSPPAT00000050543 UniProtKB/TrEMBL
InterPro Alpha_Spectrin_SH3 UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF-hand_Ca_insen UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
KEGG Report pps:100976032 UniProtKB/TrEMBL
NCBI Gene SPTAN1 ENTREZGENE
Pfam EF-hand_7 UniProtKB/TrEMBL
  EFhand_Ca_insen UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A2R9BDC8_PANPA UniProtKB/TrEMBL
  A0A2R9BEI2_PANPA UniProtKB/TrEMBL
  A0A2R9BEJ7_PANPA UniProtKB/TrEMBL
  A0A2R9BEM5_PANPA UniProtKB/TrEMBL
  A0A2R9BH32_PANPA UniProtKB/TrEMBL
  A0A2R9BH53_PANPA UniProtKB/TrEMBL
  A0A2R9BM30_PANPA UniProtKB/TrEMBL