SIGLECL1 (SIGLEC family like 1) - Rat Genome Database

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Gene: SIGLECL1 (SIGLEC family like 1) Pan paniscus
Analyze
Symbol: SIGLECL1
Name: SIGLEC family like 1
RGD ID: 11742802
Description: ENCODES a protein that exhibits sialic acid binding (inferred); INVOLVED IN cell adhesion (inferred); ASSOCIATED WITH genetic disease (ortholog); multiple acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SIGLEC family-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22057,303,190 - 57,307,712 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11959,224,672 - 59,229,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01948,200,978 - 48,206,643 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11957,088,147 - 57,092,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1957,088,147 - 57,092,665 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SIGLECL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22057,303,190 - 57,307,712 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11959,224,672 - 59,229,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01948,200,978 - 48,206,643 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11957,088,147 - 57,092,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1957,088,147 - 57,092,665 (+)Ensemblpanpan1.1panPan2
SIGLECL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381951,246,332 - 51,269,330 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1951,246,348 - 51,269,330 (+)EnsemblGRCh38hg38GRCh38
GRCh371951,749,587 - 51,772,584 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361956,452,776 - 56,464,394 (+)NCBINCBI36Build 36hg18NCBI36
Celera1948,813,054 - 48,824,675 (+)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1948,087,388 - 48,105,641 (+)NCBIHuRef
CHM1_11951,756,401 - 51,774,655 (+)NCBICHM1_1
T2T-CHM13v2.01954,334,953 - 54,357,956 (+)NCBIT2T-CHM13v2.0
Siglecl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,160,589 - 43,172,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,160,589 - 43,168,394 (-)EnsemblGRCm39 Ensembl
GRCm38743,511,165 - 43,519,079 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl743,511,165 - 43,518,970 (-)EnsemblGRCm38mm10GRCm38
MGSCv37750,766,538 - 50,774,340 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36750,766,538 - 50,774,340 (-)NCBIMGSCv36mm8
Celera738,979,953 - 38,987,875 (-)NCBICelera
Cytogenetic Map7B3NCBI
Siglecl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81103,053,539 - 103,062,054 (-)NCBIGRCr8
mRatBN7.2193,916,971 - 93,924,742 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl193,916,970 - 93,924,758 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl193,900,773 - 93,913,028 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0198,424,994 - 98,436,634 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl198,425,903 - 98,438,776 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl198,414,226 - 98,421,973 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,491,038 - 99,498,849 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4193,884,846 - 93,902,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera188,179,043 - 88,190,111 (-)NCBICelera
Cytogenetic Map1q22NCBI
Siglecl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555581,101,532 - 1,116,578 (-)NCBIChiLan1.0ChiLan1.0
SIGLECL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11105,683,766 - 105,698,305 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1105,674,317 - 105,674,871 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1105,684,260 - 105,698,903 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,256,386 - 105,270,971 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,193,044 - 106,207,594 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,193,843 - 106,198,116 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11105,864,876 - 105,879,396 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,505,875 - 105,520,422 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,301,067 - 106,315,665 (-)NCBIUU_Cfam_GSD_1.0
Siglecl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,992,481 - 23,009,582 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493698164,077 - 68,167 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIGLECL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1644,179,076 - 44,194,110 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl644,188,702 - 44,193,214 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607324,219,877 - 24,241,062 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Siglecl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248323,570,765 - 3,580,342 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024926734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000023152   ⟹   ENSPPAP00000005065
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1957,088,147 - 57,092,665 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000023154   ⟹   ENSPPAP00000005067
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1957,088,147 - 57,092,665 (+)Ensembl
RefSeq Acc Id: XM_024926734   ⟹   XP_024782502
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22057,303,190 - 57,307,712 (+)NCBI
NHGRI_mPanPan11959,224,672 - 59,229,193 (+)NCBI
Mhudiblu_PPA_v01948,200,978 - 48,206,643 (+)NCBI
PanPan1.11957,088,147 - 57,092,876 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_024782502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005065.1
  ENSPPAP00000005067.1
Reference Protein Sequences
RefSeq Acc Id: XP_024782502   ⟸   XM_024926734
- UniProtKB: A0A2R8ZM98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000005065   ⟸   ENSPPAT00000023152
RefSeq Acc Id: ENSPPAP00000005067   ⟸   ENSPPAT00000023154


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000021100 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000023152.1 UniProtKB/TrEMBL
  ENSPPAT00000023154.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene SIGLECL1 ENTREZGENE
PANTHER RIKEN CDNA 4931406B18 GENE UniProtKB/TrEMBL
  SIALIC ACID BINDING IMMUNOGLOBULIN-LIKE LECTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R8ZJD5_PANPA UniProtKB/TrEMBL
  A0A2R8ZM98 ENTREZGENE, UniProtKB/TrEMBL