COL6A3 (collagen type VI alpha 3 chain) - Rat Genome Database
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Gene: COL6A3 (collagen type VI alpha 3 chain) Pan paniscus
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Symbol: COL6A3
Name: collagen type VI alpha 3 chain
RGD ID: 11738917
Description: INVOLVED IN response to glucose (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Ataxia (ortholog); Bethlem myopathy (ortholog); Bethlem Myopathy 1 (ortholog); FOUND IN collagen trimer (ortholog); extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-3(VI) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B243,407,786 - 243,497,700 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02B124,554,478 - 124,644,482 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
COL6A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B243,407,786 - 243,497,700 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02B124,554,478 - 124,644,482 (-)NCBIMhudiblu_PPA_v0panPan3
COL6A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2237,324,003 - 237,414,375 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2237,324,003 - 237,414,207 (-)EnsemblGRCh38hg38GRCh38
GRCh382237,324,018 - 237,434,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372238,232,661 - 238,322,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,897,401 - 237,987,559 (-)NCBINCBI36hg18NCBI36
Build 342238,014,661 - 238,104,820NCBI
Celera2231,946,425 - 232,036,576 (-)NCBI
Cytogenetic Map2q37.3NCBI
HuRef2230,024,688 - 230,114,910 (-)NCBIHuRef
CHM1_12238,238,749 - 238,328,955 (-)NCBICHM1_1
Col6a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39190,694,582 - 90,771,710 (-)NCBIGRCm39mm39
GRCm39 Ensembl190,693,645 - 90,771,693 (-)Ensembl
GRCm38190,766,860 - 90,844,001 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl190,765,923 - 90,843,971 (-)EnsemblGRCm38mm10GRCm38
MGSCv37192,663,435 - 92,740,514 (-)NCBIGRCm37mm9NCBIm37
MGSCv36192,597,264 - 92,674,343 (-)NCBImm8
MGSCv36191,192,168 - 91,253,776 (-)NCBImm8
Celera193,712,460 - 93,789,439 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map145.53NCBI
Col6a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2991,361,578 - 91,439,434 (-)NCBI
Rnor_6.0 Ensembl997,926,787 - 98,004,546 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0997,926,784 - 98,004,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0997,607,496 - 97,685,349 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4989,990,129 - 90,043,697 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,169,794 - 90,232,286 (-)NCBI
Celera988,906,089 - 88,983,949 (-)NCBICelera
Cytogenetic Map9q36NCBI
Col6a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,887,723 - 2,949,062 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,869,183 - 2,950,569 (+)NCBIChiLan1.0ChiLan1.0
COL6A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2547,971,315 - 48,052,402 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12547,971,439 - 48,052,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Col6a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936525905,419 - 983,486 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL6A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,011,433 - 137,103,709 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115137,011,549 - 137,103,687 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,450,581 - 151,542,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL6A3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,326,337 - 123,418,836 (-)NCBI
ChlSab1.1 Ensembl10123,327,102 - 123,400,114 (-)Ensembl
Col6a3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248472,786,560 - 2,863,800 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003813106   ⟹   XP_003813154
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B243,407,786 - 243,497,694 (-)NCBI
Mhudiblu_PPA_v02B124,554,478 - 124,644,479 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003813107   ⟹   XP_003813155
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B243,407,786 - 243,497,692 (-)NCBI
Mhudiblu_PPA_v02B124,554,478 - 124,644,482 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034955426   ⟹   XP_034811317
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B124,554,478 - 124,644,479 (-)NCBI
RefSeq Acc Id: XM_034955427   ⟹   XP_034811318
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B124,554,478 - 124,644,480 (-)NCBI
RefSeq Acc Id: XM_034955428   ⟹   XP_034811319
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B124,554,478 - 124,644,479 (-)NCBI
RefSeq Acc Id: XM_034955429   ⟹   XP_034811320
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B124,554,478 - 124,644,479 (-)NCBI
RefSeq Acc Id: XM_034955430   ⟹   XP_034811321
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B124,554,478 - 124,644,478 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003813154   ⟸   XM_003813106
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_003813155   ⟸   XM_003813107
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_034811318   ⟸   XM_034955427
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034811319   ⟸   XM_034955428
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034811320   ⟸   XM_034955429
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034811317   ⟸   XM_034955426
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034811321   ⟸   XM_034955430
- Peptide Label: isoform X6

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038270 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000030663 UniProtKB/TrEMBL
  ENSPPAP00000030674 UniProtKB/TrEMBL
  ENSPPAP00000030686 UniProtKB/TrEMBL
  ENSPPAP00000030690 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053526 UniProtKB/TrEMBL
  ENSPPAT00000053537 UniProtKB/TrEMBL
  ENSPPAT00000053549 UniProtKB/TrEMBL
  ENSPPAT00000053553 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
  4.10.410.10 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Kunitz_BPTI UniProtKB/TrEMBL
  Kunitz_BPTI_sf UniProtKB/TrEMBL
  Prtase_inh_Kunz-CS UniProtKB/TrEMBL
  vWA_collagen_alpha3-VI-like UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene COL6A3 ENTREZGENE
Pfam Collagen UniProtKB/TrEMBL
  Kunitz_BPTI UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PRINTS BASICPTASE UniProtKB/TrEMBL
PROSITE BPTI_KUNITZ_1 UniProtKB/TrEMBL
  BPTI_KUNITZ_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART SM00131 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
  SSF57362 UniProtKB/TrEMBL
UniProt A0A2R9BLV4_PANPA UniProtKB/TrEMBL
  A0A2R9BM16_PANPA UniProtKB/TrEMBL
  A0A2R9BMP8_PANPA UniProtKB/TrEMBL
  A0A2R9BVY9_PANPA UniProtKB/TrEMBL