SCGB2A1 (secretoglobin family 2A member 1) - Rat Genome Database

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Gene: SCGB2A1 (secretoglobin family 2A member 1) Pan paniscus
Analyze
Symbol: SCGB2A1
Name: secretoglobin family 2A member 1
RGD ID: 11737375
Description: INVOLVED IN androgen receptor signaling pathway (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mammaglobin-B
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,439,809 - 63,448,507 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,482,829 - 64,491,284 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,572,795 - 57,578,901 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,930,424 - 60,935,672 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,930,424 - 60,935,672 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SCGB2A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,439,809 - 63,448,507 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,482,829 - 64,491,284 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,572,795 - 57,578,901 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,930,424 - 60,935,672 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,930,424 - 60,935,672 (+)Ensemblpanpan1.1panPan2
SCGB2A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,208,673 - 62,213,943 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,208,673 - 62,213,943 (+)EnsemblGRCh38hg38GRCh38
GRCh371161,976,145 - 61,981,415 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,732,716 - 61,737,984 (+)NCBINCBI36Build 36hg18NCBI36
Build 341161,732,715 - 61,737,984NCBI
Celera1159,305,589 - 59,310,869 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,304,514 - 58,309,811 (+)NCBIHuRef
CHM1_11161,859,034 - 61,864,284 (+)NCBICHM1_1
T2T-CHM13v2.01162,197,948 - 62,203,186 (+)NCBIT2T-CHM13v2.0
Scgb2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,922,751 - 215,926,114 (+)NCBIGRCr8
mRatBN7.21206,497,848 - 206,501,211 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1206,369,664 - 206,372,443 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1206,497,849 - 206,501,211 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,879,106 - 214,882,471 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,931,385 - 221,934,748 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,626,391 - 214,629,754 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,899,313 - 225,902,676 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,899,313 - 225,902,676 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,825,356 - 225,830,355 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,850,593 - 232,853,956 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,297,718 - 212,301,081 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1203,995,525 - 203,998,888 (+)NCBICelera
Cytogenetic Map1q43NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003828475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000058556   ⟹   ENSPPAP00000035667
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1160,930,424 - 60,935,672 (+)Ensembl
RefSeq Acc Id: XM_003828475   ⟹   XP_003828523
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2963,439,809 - 63,448,507 (+)NCBI
NHGRI_mPanPan11164,482,829 - 64,491,284 (+)NCBI
Mhudiblu_PPA_v01157,572,795 - 57,578,901 (+)NCBI
PanPan1.11160,930,424 - 60,935,672 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003828523 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000035667.1
Reference Protein Sequences
RefSeq Acc Id: XP_003828523   ⟸   XM_003828475
- UniProtKB: A0A2R9C1P9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000035667   ⟸   ENSPPAT00000058556


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040636 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058556.1 UniProtKB/TrEMBL
InterPro Secretoglobin UniProtKB/TrEMBL
  Secretoglobin_sf UniProtKB/TrEMBL
KEGG Report pps:100986071 UniProtKB/TrEMBL
NCBI Gene SCGB2A1 ENTREZGENE
PANTHER MAMMAGLOBIN-B UniProtKB/TrEMBL
  MAMMAGLOBIN-RELATED UniProtKB/TrEMBL
Pfam Uteroglobin UniProtKB/TrEMBL
PROSITE SCGB UniProtKB/TrEMBL
Superfamily-SCOP SSF48201 UniProtKB/TrEMBL
UniProt A0A2R9C1P9 ENTREZGENE, UniProtKB/TrEMBL