LIMS2 (LIM zinc finger domain containing 2)

Gene: LIMS2 (LIM zinc finger domain containing 2) Pan paniscus

Analyze

Symbol:

LIMS2

Name:

LIM zinc finger domain containing 2

RGD ID:

11736305

Description:

ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN cell-cell adhesion (ortholog); cell-cell junction organization (ortholog); cholangiocyte proliferation (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2W (ortholog); centronuclear myopathy 2 (ortholog); FOUND IN anchoring junction (inferred); cell-cell junction (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LIM and senescent cell antigen-like-containing domain protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	47,962,453 - 48,005,844 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	47,977,422 - 48,020,823 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	32,594,330 - 32,637,697 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	128,304,799 - 128,347,951 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	128,304,799 - 128,347,951 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant thrombophilia due to protein C deficiency (ISO)

autosomal recessive limb-girdle muscular dystrophy type 2W (ISO)

centronuclear myopathy 2 (ISO)

genetic disease (ISO)

neutropenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IEA,ISO)

cell-cell junction organization (IEA,ISO)

cholangiocyte proliferation (IEA,ISO)

integrin-mediated signaling pathway (IEA,ISO)

negative regulation of apoptotic process (IEA,ISO)

negative regulation of cholangiocyte proliferation (IEA,ISO)

negative regulation of hepatocyte proliferation (IEA,ISO)

negative regulation of neural precursor cell proliferation (IEA,ISO)

neural precursor cell proliferation (IEA,ISO)

positive regulation of integrin-mediated signaling pathway (IEA,ISO)

positive regulation of substrate adhesion-dependent cell spreading (IEA)

Cellular Component

anchoring junction (IEA)

cell-cell junction (IEA)

cytoplasm (IEA)

focal adhesion (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

integrin mediated signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LIMS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	47,962,453 - 48,005,844 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	47,977,422 - 48,020,823 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	32,594,330 - 32,637,697 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	128,304,799 - 128,347,951 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	128,304,799 - 128,347,951 (-)	Ensembl	panpan1.1		panPan2

LIMS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	127,638,426 - 127,681,786 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	127,638,381 - 127,681,786 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	128,396,001 - 128,439,360 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	128,112,471 - 128,138,590 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	128,112,232 - 128,138,343	NCBI
Celera	2	121,706,938 - 121,750,307 (-)	NCBI		Celera
Cytogenetic Map	2	q14.3	NCBI
HuRef	2	120,702,371 - 120,745,600 (-)	NCBI		HuRef
CHM1_1	2	128,400,424 - 128,443,742 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	128,073,680 - 128,117,027 (-)	NCBI		T2T-CHM13v2.0

Lims2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	32,055,346 - 32,091,673 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	32,055,343 - 32,091,672 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	31,922,293 - 31,958,620 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	31,922,290 - 31,958,619 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	32,091,161 - 32,118,273 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	32,074,517 - 32,101,629 (+)	NCBI		MGSCv36	mm8
Celera	18	32,422,000 - 32,448,987 (+)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	17.89	NCBI

Lims2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,828,164 - 23,866,363 (+)	NCBI		GRCr8
mRatBN7.2	18	23,553,937 - 23,592,137 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,553,937 - 23,592,137 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	23,682,035 - 23,720,226 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,431,078 - 24,469,221 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,777,003 - 23,815,196 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,707,951 - 24,746,159 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,708,115 - 24,746,159 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	24,422,274 - 24,460,482 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	24,347,374 - 24,386,082 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	24,374,019 - 24,412,728 (+)	NCBI
Celera	18	23,306,381 - 23,344,707 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

Lims2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	2,864,580 - 2,914,263 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955459	2,874,282 - 2,913,956 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIMS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	22,932,251 - 22,978,437 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	22,931,779 - 22,982,765 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	23,179,486 - 23,225,586 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	24,258,143 - 24,304,404 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	24,263,562 - 24,304,401 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	22,962,031 - 23,008,263 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	23,156,801 - 23,202,782 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	24,288,646 - 24,334,679 (+)	NCBI		UU_Cfam_GSD_1.0

Lims2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	97,952,575 - 97,989,447 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	43,634,074 - 43,665,175 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	43,628,280 - 43,665,145 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIMS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	59,672,540 - 59,709,379 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	59,672,508 - 59,709,380 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	66,435,456 - 66,458,874 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIMS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	2,540,383 - 2,578,117 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	2,543,091 - 2,579,332 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666061	20,181,687 - 20,218,054 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lims2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	14,102,543 - 14,144,722 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	14,102,543 - 14,144,479 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003828252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008953606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008953614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008953615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034954219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034954220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034954222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034954223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034954224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034954225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034954226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055108567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057301411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000051418 ⟹ ENSPPAP00000028571

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	128,304,799 - 128,347,951 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000051423 ⟹ ENSPPAP00000028576

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	128,304,799 - 128,340,299 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000051425 ⟹ ENSPPAP00000028578

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	128,304,799 - 128,330,908 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000051432 ⟹ ENSPPAP00000028584

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	128,304,799 - 128,324,832 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000051438 ⟹ ENSPPAP00000028591

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	128,305,658 - 128,324,193 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000051441 ⟹ ENSPPAP00000028593

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	128,305,658 - 128,312,352 (-)	Ensembl

RefSeq Acc Id:

XM_008953606 ⟹ XP_008951854

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,977,605 - 48,005,844 (+)	NCBI
NHGRI_mPanPan1	2B	47,994,344 - 48,020,823 (+)	NCBI
Mhudiblu_PPA_v0	2B	32,611,490 - 32,637,697 (+)	NCBI
PanPan1.1	2B	128,304,799 - 128,330,908 (-)	NCBI

Sequence:

show sequence

ATGGCAGCCCGGCTGGGTGCGCTGGCCGCGTCGGGGCTGTACCGGCGGCGCCAGCACCGGCAGA
GCCCGCCGCCCGCCACGGGCAATATGTCGGACGCCTTGGCCAACGCCGTGTGCCAGCGCTGCCA
GGCCCGCTTCTCCCCCGCCGAGCGCATTGTCAACAGCAATGGGGAGCTGTATCATGAGCACTGC
TTCGTGTGTGCCCAGTGCTTCCGGCCCTTCCCCGAGGGGCTCTTCTATGAGTTTGAAGGCCGGA
AGTACTGCGAACACGACTTCCAAATGCTGTTTGCTCCGTGCTGTGGATCCTGCGGTGAGTTCAT
CATTGGCCGCGTCATCAAGGCCATGAACAACAACTGGCACCCGGGCTGCTTCCGCTGCGAGCTG
TGTGATGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAATGCCGGCAGGCATCTCTGCCGGCCTT
GCCACAACCGTGAGAAGGCCAAGGGCCTGGGCAAGTACATCTGCCAGCGGTGCCACCTGGTCAT
CGACGAGCAGCCCCTCATGTTCAGGAGCGACGCCTACCACCCTGACCACTTCAACTGCACCCAC
TGTGGGAAGGAGCTGACGGCCGAGGCCCGCGAGCTGAAGGGTGAGCTCTACTGCCTGCCCTGCC
ATGACAAGATGGGCGTCCCCATCTGTGGGGCCTGCCGCCGGCCCATCGAGGGCCGAGTGGTCAA
CGCGCTGGGCAAGCAGTGGCACGTGGAGCACTTTGTCTGTGCCAAGTGTGAGAAGCCATTCCTG
GGGCACCGGCACTATGAGAAGAAGGGCCTGGCCTACTGCGAGACTCACTACAACCAGCTCTTCG
GGGACGTCTGCTACAACTGCAGCCATGTGATTGAAGGCGATGTGGTGTCGGCCCTCAACAAGGC
CTGGTGTGTGAGCTGCTTCTCCTGCTCCACCTGCAACAGCAAGCTCACCCTGAAGAACAAGTTT
GTGGAGTTCGACATGAAGCCCGTGTGTAAGAGGTGCTACGAGAAGTTCCCGCTGGAGCTGAAGA
AGCGGCTGAAGAAGCTGTCGGAGCTGACCTCCCGCAAGGCCCAGCCCAAGGCCGCAGACCTCAA
CTCTGCCTGAAGGCCCTCTTGCGCAGCCGCCTCTCGGCCCCTCCGCCTTCTCCCCTCCCGCTGT
CCATGCTCGGCCCCCTCGTCCCCATCCACCTGTGCCCTCCGCATCTTACCCTCCCTTTCTCTTT
CCTCATTGCCTTCTCCCTTCCTGTTCCCTCATCTCTGCCTTCCCCATGTCTCTCCTCTCCTTGG
CCGTGGCTTCTGTCTGTGAGGAGGTAGGAGCTGGGGAGTGGGAGCCTATGACCCCATGTCTGAC
AGCCATGTCCACCTGTGCCCACAGCTTCCGCCCACAGACCTCCAGGGACAGGAGCAAATTGCAC
CACAGCTCCCCGCCTGGCCTGGCCCTCCCCAGGCGGCTCAGTGGCTCTTGCTGTCCTGTGAGAG
CCCCTGCCCCAGAGCGGCCCCACTAAGCGCATGTGGCTCCTGGGCTACCCACAGCCAGGGCAGC
CTGCTGGAGCCACACAGGGCCAGGGCCATGCAGATGGAGGCCTCTGGGAGCCACCTCCAATCCC
TCACCACTCACTCAACCAGTGGCACAGTGTCCTTGTGCCCACACTGAGCCAGCAAGTCCTGCTG
TCCACACCCACAAGCTACCTGGAGGGACAGGACCCACCTCCATCCTTCGGAAGGCCTTCCTGGA
ATCCCACCTTGGCCTCCCACCTCGGTTCCGCCCCGCCCCCCTCCCCCTGACCTTGGGGCTTGTG
TTGAGCCCTTGGGTGGGGCCAGGAGGTGATGGCGTCAGAGGAGGTGTGGTCAGAGGTGGCTTGT
TCCCACCTCCAGGGAGGACGCTTTGTCTTCGGCCAGCGCAGACCCGTTGTTTGTTTGTTGGGCT
CACGCTTGCACAATGAAGGCTTGTTCACACAACCACA

hide sequence

RefSeq Acc Id:

XM_034954220 ⟹ XP_034810111

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,968,163 - 48,005,844 (+)	NCBI
NHGRI_mPanPan1	2B	47,983,400 - 48,020,823 (+)	NCBI
Mhudiblu_PPA_v0	2B	32,600,318 - 32,637,692 (+)	NCBI

RefSeq Acc Id:

XM_034954222 ⟹ XP_034810113

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,968,399 - 48,005,844 (+)	NCBI
NHGRI_mPanPan1	2B	47,983,402 - 48,020,823 (+)	NCBI
Mhudiblu_PPA_v0	2B	32,600,819 - 32,637,692 (+)	NCBI

RefSeq Acc Id:

XM_034954223 ⟹ XP_034810114

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,968,397 - 48,005,844 (+)	NCBI
NHGRI_mPanPan1	2B	47,983,400 - 48,020,823 (+)	NCBI
Mhudiblu_PPA_v0	2B	32,600,304 - 32,637,692 (+)	NCBI

RefSeq Acc Id:

XM_034954226 ⟹ XP_034810117

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,962,453 - 48,005,844 (+)	NCBI
NHGRI_mPanPan1	2B	47,977,422 - 48,020,823 (+)	NCBI
Mhudiblu_PPA_v0	2B	32,594,633 - 32,637,692 (+)	NCBI

RefSeq Acc Id:

XM_055108567 ⟹ XP_054964542

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,993,537 - 48,005,844 (+)	NCBI
NHGRI_mPanPan1	2B	48,008,491 - 48,020,823 (+)	NCBI

RefSeq Acc Id:

XM_057301411 ⟹ XP_057157394

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,996,259 - 48,005,844 (+)	NCBI
NHGRI_mPanPan1	2B	48,011,235 - 48,020,823 (+)	NCBI

RefSeq Acc Id:

XM_063595190 ⟹ XP_063451260

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,968,410 - 48,005,844 (+)	NCBI

RefSeq Acc Id:

XM_063595191 ⟹ XP_063451261

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,989,511 - 48,005,844 (+)	NCBI

RefSeq Acc Id:

XM_063595192 ⟹ XP_063451262

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	47,968,394 - 48,005,844 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008951854	(Get FASTA)	NCBI Sequence Viewer
	XP_034810111	(Get FASTA)	NCBI Sequence Viewer
	XP_034810113	(Get FASTA)	NCBI Sequence Viewer
	XP_034810114	(Get FASTA)	NCBI Sequence Viewer
	XP_034810117	(Get FASTA)	NCBI Sequence Viewer
	XP_054964542	(Get FASTA)	NCBI Sequence Viewer
	XP_057157394	(Get FASTA)	NCBI Sequence Viewer
	XP_063451260	(Get FASTA)	NCBI Sequence Viewer
	XP_063451261	(Get FASTA)	NCBI Sequence Viewer
	XP_063451262	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000028571.1
	ENSPPAP00000028576.1
	ENSPPAP00000028578
	ENSPPAP00000028578.1
	ENSPPAP00000028584.1
	ENSPPAP00000028591.1
	ENSPPAP00000028593.1

RefSeq Acc Id:	XP_008951854 ⟸ XM_008953606
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BH15 (UniProtKB/TrEMBL), A0A2R9BPK6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELYHEHC FVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPGCFRCEL CDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRSDAYHPDHFNCTH CGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFL GHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKF VEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAADLNSA hide sequence

RefSeq Acc Id:	XP_034810117 ⟸ XM_034954226
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BPK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034810114 ⟸ XM_034954223
- Peptide Label:	isoform X6
- UniProtKB:	A0A2R9BH26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034810111 ⟸ XM_034954220
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BPK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034810113 ⟸ XM_034954222
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BPK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000028578 ⟸ ENSPPAT00000051425

RefSeq Acc Id:

ENSPPAP00000028576 ⟸ ENSPPAT00000051423

RefSeq Acc Id:

ENSPPAP00000028571 ⟸ ENSPPAT00000051418

RefSeq Acc Id:

ENSPPAP00000028584 ⟸ ENSPPAT00000051432

RefSeq Acc Id:

ENSPPAP00000028593 ⟸ ENSPPAT00000051441

RefSeq Acc Id:

ENSPPAP00000028591 ⟸ ENSPPAT00000051438

RefSeq Acc Id:	XP_054964542 ⟸ XM_055108567
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R9BH26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_057157394 ⟸ XM_057301411
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9BH26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063451262 ⟸ XM_063595192
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063451260 ⟸ XM_063595190
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063451261 ⟸ XM_063595191
- Peptide Label:	isoform X7

Protein Domains

LIM zinc-binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000037291	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000051418.1	UniProtKB/TrEMBL
	ENSPPAT00000051423.1	UniProtKB/TrEMBL
	ENSPPAT00000051425.1	UniProtKB/TrEMBL
	ENSPPAT00000051432.1	UniProtKB/TrEMBL
	ENSPPAT00000051438.1	UniProtKB/TrEMBL
	ENSPPAT00000051441.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	LIMS1/2-like_LIM1	UniProtKB/TrEMBL
	PINCH-1/2-like	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	LIMS2	ENTREZGENE
PANTHER	LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN 2	UniProtKB/TrEMBL
	PTHR24210	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PIRSF	PINCH	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A2R9BG17_PANPA	UniProtKB/TrEMBL
	A0A2R9BH15	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BH26	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BPK6	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BPL1_PANPA	UniProtKB/TrEMBL
	A0A2R9BPM2_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations