ZNF43 (zinc finger protein 43) - Rat Genome Database

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Gene: ZNF43 (zinc finger protein 43) Pan paniscus
Analyze
Symbol: ZNF43
Name: zinc finger protein 43
RGD ID: 11735699
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100970298
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22026,419,557 - 26,463,384 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11925,424,568 - 25,468,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01920,996,383 - 21,042,912 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11922,069,017 - 22,099,432 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1922,070,012 - 22,115,087 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZNF43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22026,419,557 - 26,463,384 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11925,424,568 - 25,468,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01920,996,383 - 21,042,912 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11922,069,017 - 22,099,432 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1922,070,012 - 22,115,087 (-)Ensemblpanpan1.1panPan2
ZNF43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381921,804,946 - 21,852,065 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1921,804,946 - 21,852,125 (-)EnsemblGRCh38hg38GRCh38
GRCh371921,987,748 - 22,034,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361921,779,592 - 21,810,810 (-)NCBINCBI36Build 36hg18NCBI36
Build 341921,781,994 - 21,826,610NCBI
Celera1921,819,896 - 21,851,121 (-)NCBICelera
Cytogenetic Map19p12NCBI
HuRef1921,526,977 - 21,574,141 (-)NCBIHuRef
CHM1_11921,987,225 - 22,034,354 (-)NCBICHM1_1
T2T-CHM13v2.01921,943,416 - 21,990,533 (-)NCBIT2T-CHM13v2.0
Zfp729a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391367,760,879 - 67,785,925 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1367,760,882 - 67,785,910 (-)EnsemblGRCm39 Ensembl
GRCm381367,612,760 - 67,637,803 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1367,612,763 - 67,637,791 (-)EnsemblGRCm38mm10GRCm38
MGSCv371367,717,938 - 67,738,690 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361368,118,131 - 68,136,869 (-)NCBIMGSCv36mm8
Celera1369,659,878 - 69,685,244 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.62NCBI
Zfp458
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8286,369,495 - 86,410,904 (+)NCBIGRCr8
mRatBN7.2284,661,150 - 84,705,631 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl284,693,186 - 84,702,558 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx291,720,360 - 91,729,757 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0289,841,977 - 89,851,374 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0284,898,222 - 84,907,619 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0286,971,129 - 86,980,519 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl286,971,147 - 86,980,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02106,640,444 - 106,652,451 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4286,170,482 - 86,179,872 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera280,105,549 - 80,114,938 (+)NCBICelera
Cytogenetic Map2q23NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000043613   ⟹   ENSPPAP00000020816
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1922,070,012 - 22,115,087 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043617   ⟹   ENSPPAP00000020820
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1922,070,012 - 22,099,169 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043622   ⟹   ENSPPAP00000020825
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1922,074,007 - 22,081,172 (-)Ensembl
RefSeq Acc Id: XM_008955529   ⟹   XP_008953777
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22026,419,557 - 26,452,711 (-)NCBI
NHGRI_mPanPan11925,424,569 - 25,457,767 (-)NCBI
Mhudiblu_PPA_v01920,996,383 - 21,026,680 (-)NCBI
PanPan1.11922,069,017 - 22,099,432 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034945648   ⟹   XP_034801539
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22026,419,557 - 26,463,384 (-)NCBI
NHGRI_mPanPan11925,424,568 - 25,468,442 (-)NCBI
Mhudiblu_PPA_v01920,996,383 - 21,034,096 (-)NCBI
RefSeq Acc Id: XM_034945650   ⟹   XP_034801541
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22026,419,557 - 26,452,687 (-)NCBI
NHGRI_mPanPan11925,424,569 - 25,457,728 (-)NCBI
Mhudiblu_PPA_v01920,996,383 - 21,026,680 (-)NCBI
RefSeq Acc Id: XM_063600070   ⟹   XP_063456140
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22026,419,557 - 26,434,758 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008953777 (Get FASTA)   NCBI Sequence Viewer  
  XP_034801539 (Get FASTA)   NCBI Sequence Viewer  
  XP_034801541 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456140 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020816.1
  ENSPPAP00000020820.1
  ENSPPAP00000020825.1
Reference Protein Sequences
RefSeq Acc Id: XP_008953777   ⟸   XM_008955529
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034801539   ⟸   XM_034945648
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034801541   ⟸   XM_034945650
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000020825   ⟸   ENSPPAT00000043622
RefSeq Acc Id: ENSPPAP00000020816   ⟸   ENSPPAT00000043613
RefSeq Acc Id: ENSPPAP00000020820   ⟸   ENSPPAT00000043617
RefSeq Acc Id: XP_063456140   ⟸   XM_063600070
- Peptide Label: isoform X2
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033633 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043613.1 UniProtKB/TrEMBL
  ENSPPAT00000043617.1 UniProtKB/TrEMBL
  ENSPPAT00000043622.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC100970298 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 726 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 727 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9AU26_PANPA UniProtKB/TrEMBL
  A0A2R9AYB3_PANPA UniProtKB/TrEMBL
  A0A2R9AYB9_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 ZNF43  zinc finger protein 43  LOC100970298  zinc finger protein 43  Symbol and/or name change 5135510 APPROVED