SELENOK (selenoprotein K) - Rat Genome Database

Name: SELENOK
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: SELENOK (selenoprotein K) Pan paniscus

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Symbol:

SELENOK

Name:

selenoprotein K

RGD ID:

11734879

Description:

ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN calcium ion transport (ortholog); establishment of localization in cell (ortholog); macrophage derived foam cell differentiation (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); Golgi apparatus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SELENOK (selenoprotein K)	NCBI	Ortholog
Mus musculus (house mouse):	Selenok (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Selenok (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Selenok (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SELENOK (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Selenok (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SELENOK (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SELENOK (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Selenok (selenoprotein K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	53,877,081 - 53,883,873 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	53,881,755 - 53,888,643 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	53,823,135 - 53,829,957 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	55,044,026 - 55,050,960 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	55,044,789 - 55,047,450 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transport (IEA,ISO)

endoplasmic reticulum calcium ion homeostasis (IEA)

establishment of localization in cell (IEA,ISO)

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (IEA)

macrophage derived foam cell differentiation (IEA,ISO)

neutrophil migration (IEA,ISO)

positive regulation of chemokine production (IEA)

positive regulation of defense response to virus by host (IEA)

positive regulation of interleukin-6 production (IEA)

positive regulation of monocyte chemotactic protein-1 production (IEA)

positive regulation of neutrophil migration (IEA,ISO)

positive regulation of T cell migration (IEA,ISO)

positive regulation of T cell proliferation (IEA,ISO)

positive regulation of tumor necrosis factor production (IEA)

protein palmitoylation (IEA,ISO)

regulation of calcium-mediated signaling (IEA)

regulation of protein transport (IEA,ISO)

regulation of store-operated calcium entry (ISO)

respiratory burst after phagocytosis (IEA,ISO)

response to oxidative stress (IEA)

T cell migration (IEA,ISO)

T cell proliferation (IEA,ISO)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

Golgi apparatus (IEA)

membrane (IEA)

Molecular Function

identical protein binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SELENOK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	53,877,081 - 53,883,873 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	53,881,755 - 53,888,643 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	53,823,135 - 53,829,957 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	55,044,026 - 55,050,960 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	55,044,789 - 55,047,450 (-)	Ensembl	panpan1.1		panPan2

SELENOK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	53,884,417 - 53,891,859 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	53,884,417 - 53,891,885 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	53,918,444 - 53,925,886 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	53,894,266 - 53,901,029 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	53,886,504 - 53,893,267 (-)	NCBI		Celera
Cytogenetic Map	3	p21.1	NCBI
HuRef	3	53,967,743 - 53,974,504 (-)	NCBI		HuRef
CHM1_1	3	53,870,843 - 53,877,606 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	53,917,657 - 53,925,099 (-)	NCBI		T2T-CHM13v2.0

Selenok
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	29,690,337 - 29,697,031 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	29,690,265 - 29,697,619 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	29,968,380 - 29,975,074 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	29,968,308 - 29,975,662 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	30,781,566 - 30,788,260 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	28,797,426 - 28,804,083 (+)	NCBI		MGSCv36	mm8
Celera	14	26,224,212 - 26,230,906 (+)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	18.36	NCBI

Selenok
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	5,158,601 - 5,167,183 (+)	NCBI		GRCr8
mRatBN7.2	16	5,152,066 - 5,160,648 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	5,152,066 - 5,159,188 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	5,164,061 - 5,172,618 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	6,309,490 - 6,318,047 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	5,161,535 - 5,170,089 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	6,035,926 - 6,044,240 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	6,035,926 - 6,044,239 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	5,967,057 - 5,975,371 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	5,306,405 - 5,314,721 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	5,306,458 - 5,314,718 (+)	NCBI
Celera	16	10,023,918 - 10,032,235 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

Selenok
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955430	3,870,925 - 3,876,636 (-)	NCBI	ChiLan1.0	ChiLan1.0

SELENOK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	36,109,095 - 36,115,792 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	36,109,148 - 36,115,856 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	36,046,592 - 36,053,289 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	36,383,192 - 36,389,892 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	36,383,245 - 36,389,965 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	35,825,109 - 35,831,800 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	36,183,706 - 36,190,402 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	36,400,934 - 36,407,849 (+)	NCBI		UU_Cfam_GSD_1.0

Selenok
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	171,407,613 - 171,414,243 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	4,545,961 - 4,552,822 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	4,546,186 - 4,552,764 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SELENOK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	35,990,182 - 35,996,853 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	35,989,461 - 35,996,824 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	39,060,209 - 39,067,575 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SELENOK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	15,267,915 - 15,274,861 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	151,616,322 - 151,623,390 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Selenok
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624822	3,309,170 - 3,314,882 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014344258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000001602 ⟹ ENSPPAP00000000404

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	55,044,789 - 55,047,450 (-)	Ensembl

RefSeq Acc Id:

XM_003818726 ⟹ XP_003818774

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	53,877,081 - 53,883,873 (-)	NCBI
NHGRI_mPanPan1	3	53,881,755 - 53,888,643 (-)	NCBI
Mhudiblu_PPA_v0	3	53,823,135 - 53,829,957 (-)	NCBI
PanPan1.1	3	55,044,026 - 55,050,960 (-)	NCBI

Sequence:

show sequence

TCGGCCGCCTCCGCCTAACCGGAAGTCGCGATGTGACGATGCAAAAACGCCCGTCGGGGGCGCG
TCTCTTTCAGCAGCCAATGGGCTCTGCCCACCTTCGTCCTCGTCAGCATTTTGTCTAATCGCGG
CCTGTGACGCTCGAAGGGCGGGGAGCAGAGGGAGATACAGAAACCGACAGGGGCCAGGCGCCCG
GTGGCTCCGAAGCGGGGAAGTGGGACAAGATGGTTTACATCTCGAACGGACAAGTGTTGGACAG
CCGGAGTCAGTCTCCATGGAGATTATCTTTGATAACAGATTTCTTCTGGGGAATAGCTGAGTTT
GTGGTTTTGTTTTTCAAAACTCTGCTTCAGCAAGATGTGAAAAAAAGAAGAAGCTATGGAAACT
CGTCTGATTCCAGATATGATGATGGAAGAGGGCCACCGGGAAACCCTCCCCGAAGAATGGGTAG
AATCAATCATCTGCGTGGCCCTAGTCCCCCTCCAATGGCTGGTGGATGAGGAAGGTAAATGTCT
GCTCTAAGAAGCAGACAACCGGACATGCGCATTCATAGCAGAAGGAAACCATCAAGAAGTGGAA
GGCTGACCATGATGAGCAGTAGATGAATGTGTATGTCTAAACAAGGACTGCTCTGTGTCCTCAC
AGATGAATGAGGTCATGCTGGGAATTCCCTCTGCAGGGAACTGGCCTGACTGACATGCAGTTCC
ATAAATGCAGATGTTTGTCTCATTACCTTTTTGTATAGTTTATTAAAGTATTAATATAGATTTA
ATAAGTAAATATTTTTAGGTTGCAGAATGGACTCCTCATCTTTATATTCACGAAAAAGCAATCT
GAAGAAAACAAATAAAAGCCTGCGTATTTAGCACTGTTAGTGTCACCTTTTCAACTTCTGAAAC
ACTGTTCATTGTTAACTTTTTCTCATTTATAAATCACTCTATTTATTTTAGTAGTATGCATAGC
ATATCTGTGCTCTTGAATTAATTTTTATCTTTAACA

hide sequence

RefSeq Acc Id:

XM_014344258 ⟹ XP_014199744

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	53,877,704 - 53,883,808 (-)	NCBI
NHGRI_mPanPan1	3	53,882,474 - 53,888,578 (-)	NCBI
Mhudiblu_PPA_v0	3	53,823,854 - 53,829,957 (-)	NCBI
PanPan1.1	3	55,044,780 - 55,050,960 (-)	NCBI

Sequence:

show sequence

TCGGCCGCCTCCGCCTAACCGGAAGTCGCGATGTGACGATGCAAAAACGCCCGTCGGGGGCGCG
TCTCTTTCAGCAGCCAATGGGCTCTGCCCACCTTCGTCCTCGTCAGCATTTTGTCTAATCGCGG
CCTGTGACGCTCGAAGGGCGGGGAGCAGAGGGAGATACAGAAACCGACAGGGGCCAGGCGCCCG
GTGGCTCCGAAGCGGGGAAGTGGGACAAGATGGTTTACATCTCGAACGGACAAGTGTTGGACAG
CCGGAGTCAGTCTCCATGGAGATTATCTTTGATAACAGATTTCTTCTGGGGAATAGCTGAGTTT
GTGGTTTTGTTTTTCAAAACTCTGCTTCAGCAAGATGTGAAAAAAAGAAGAAGCTATGGAAACT
CGTCTGATTCCAGATATGATGATGGAAGAGGGCCACCGGGAAACCCTCCCCGAAGAATGGGTAG
AATCAATCATCTGCGTGGCCCTAGTCCCCCTCCAATGGCTGGTGGATGAGGAAGGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003818774	(Get FASTA)	NCBI Sequence Viewer
	XP_014199744	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000000404
	ENSPPAP00000000404.1

RefSeq Acc Id:	XP_003818774 ⟸ XM_003818726
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8Z6J1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDDGR GPPGNPPRRMGRINHLRGPSPPPMAGGUGR hide sequence

RefSeq Acc Id:	XP_014199744 ⟸ XM_014344258
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8Z6J1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDDGR GPPGNPPRRMGRINHLRGPSPPPMAGGUGR hide sequence

Ensembl Acc Id:

ENSPPAP00000000404 ⟸ ENSPPAT00000001602

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000001347	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000001602.1	UniProtKB/TrEMBL
InterPro	Se_SelK/SelG	UniProtKB/TrEMBL
NCBI Gene	SELENOK	ENTREZGENE
PANTHER	PTHR16875	UniProtKB/TrEMBL
	SELENOPROTEIN K	UniProtKB/TrEMBL
Pfam	SelK_SelG	UniProtKB/TrEMBL
UniProt	A0A2R8Z6J1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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