CEACAM20 (CEA cell adhesion molecule 20) - Rat Genome Database

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Gene: CEACAM20 (CEA cell adhesion molecule 20) Pan paniscus
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Symbol: CEACAM20
Name: CEA cell adhesion molecule 20
RGD ID: 11733522
Description: ENCODES a protein that exhibits protein tyrosine kinase binding (inferred); INVOLVED IN positive regulation of cytokine production (ortholog); response to bacterium (ortholog); ASSOCIATED WITH Ehrlich tumor carcinoma (ortholog); ethylmalonic encephalopathy (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); microvillus membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carcinoembryonic antigen related cell adhesion molecule 20; carcinoembryonic antigen-related cell adhesion molecule 20
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,664,333 - 50,693,575 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,536,403 - 52,565,674 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,452,476 - 41,481,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,057,938 - 50,085,519 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,058,021 - 50,085,252 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CEACAM20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,664,333 - 50,693,575 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,536,403 - 52,565,674 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,452,476 - 41,481,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,057,938 - 50,085,519 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,058,021 - 50,085,252 (-)Ensemblpanpan1.1panPan2
CEACAM20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,506,159 - 44,529,675 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,501,677 - 44,529,788 (-)EnsemblGRCh38hg38GRCh38
GRCh371945,010,211 - 45,033,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,702,051 - 49,725,388 (-)NCBINCBI36Build 36hg18NCBI36
Celera1941,814,195 - 41,837,529 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1941,442,473 - 41,465,781 (-)NCBIHuRef
CHM1_11945,012,109 - 45,035,475 (-)NCBICHM1_1
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBIT2T-CHM13v2.0
Ceacam20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,699,277 - 19,725,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,699,337 - 19,725,029 (+)EnsemblGRCm39 Ensembl
GRCm38719,965,352 - 19,991,113 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,965,412 - 19,991,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv37720,550,761 - 20,576,462 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36719,123,953 - 19,149,635 (+)NCBIMGSCv36mm8
Celera717,372,018 - 17,398,995 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.96NCBI
Ceacam20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,750,010 - 88,771,679 (+)NCBIGRCr8
mRatBN7.2179,622,077 - 79,643,782 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,622,077 - 79,643,782 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,015,491 - 85,037,243 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,565,462 - 93,587,190 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,770,608 - 86,793,057 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,880,856 - 80,912,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,880,856 - 80,912,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0182,145,568 - 82,178,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,275,467 - 79,297,252 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,353,611 - 79,375,542 (+)NCBI
Celera174,078,931 - 74,099,730 (+)NCBICelera
Cytogenetic Map1q21NCBI
Ceacam20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,752,080 - 1,769,846 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,752,634 - 1,769,148 (-)NCBIChiLan1.0ChiLan1.0
CEACAM20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,744,921 - 110,829,413 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,805,089 - 110,827,606 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,227,867 - 110,310,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,309,177 - 111,391,611 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,370,602 - 111,390,192 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,950,784 - 111,033,081 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,586,908 - 110,666,100 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,456,408 - 111,535,475 (+)NCBIUU_Cfam_GSD_1.0
Ceacam20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,937,929 - 16,951,095 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367061,286,911 - 1,298,129 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEACAM20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,009,689 - 51,031,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,010,317 - 51,031,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,867,978 - 46,886,276 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEACAM20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1637,962,389 - 37,999,329 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl637,962,583 - 37,991,246 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,519,737 - 17,603,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ceacam20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,526,226 - 1,544,429 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,529,332 - 1,544,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000030140   ⟹   ENSPPAP00000007627
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1950,058,021 - 50,085,242 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030147   ⟹   ENSPPAP00000007631
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1950,062,418 - 50,085,252 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030151   ⟹   ENSPPAP00000007634
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1950,062,418 - 50,085,252 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030153   ⟹   ENSPPAP00000007635
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1950,062,418 - 50,085,252 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030158   ⟹   ENSPPAP00000007639
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1950,066,615 - 50,085,242 (-)Ensembl
RefSeq Acc Id: XM_003817555   ⟹   XP_003817603
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,667,163 - 50,693,575 (-)NCBI
NHGRI_mPanPan11952,539,234 - 52,565,674 (-)NCBI
Mhudiblu_PPA_v01941,457,311 - 41,481,288 (-)NCBI
PanPan1.11950,062,418 - 50,085,252 (-)NCBI
Sequence:
RefSeq Acc Id: XM_057300708   ⟹   XP_057156691
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,664,333 - 50,693,575 (-)NCBI
NHGRI_mPanPan11952,536,403 - 52,565,674 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003817603 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156691 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000007627.1
  ENSPPAP00000007631
  ENSPPAP00000007631.1
  ENSPPAP00000007634.1
  ENSPPAP00000007635.1
  ENSPPAP00000007639.1
RefSeq Acc Id: XP_003817603   ⟸   XM_003817555
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZRP5 (UniProtKB/TrEMBL),   A0A2R8ZUV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000007639   ⟸   ENSPPAT00000030158
RefSeq Acc Id: ENSPPAP00000007634   ⟸   ENSPPAT00000030151
RefSeq Acc Id: ENSPPAP00000007635   ⟸   ENSPPAT00000030153
RefSeq Acc Id: ENSPPAP00000007631   ⟸   ENSPPAT00000030147
RefSeq Acc Id: ENSPPAP00000007627   ⟸   ENSPPAT00000030140
RefSeq Acc Id: XP_057156691   ⟸   XM_057300708
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZRN6 (UniProtKB/TrEMBL),   A0A2R8ZUV6 (UniProtKB/TrEMBL)
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026933 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030140.1 UniProtKB/TrEMBL
  ENSPPAT00000030147.1 UniProtKB/TrEMBL
  ENSPPAT00000030151.1 UniProtKB/TrEMBL
  ENSPPAT00000030153.1 UniProtKB/TrEMBL
  ENSPPAT00000030158.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
KEGG Report pps:100971574 UniProtKB/TrEMBL
NCBI Gene CEACAM20 ENTREZGENE
PANTHER CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 1 UniProtKB/TrEMBL
  CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 UniProtKB/TrEMBL
  CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 5-RELATED UniProtKB/TrEMBL
  CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R8ZRN6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZRP5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZUV1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZUV6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZXI4_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-27 CEACAM20  CEA cell adhesion molecule 20  CEACAM20  carcinoembryonic antigen related cell adhesion molecule 20  Symbol and/or name change 5135510 APPROVED