HES6 (hes family bHLH transcription factor 6) - Rat Genome Database

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Gene: HES6 (hes family bHLH transcription factor 6) Pan paniscus
Analyze
Symbol: HES6
Name: hes family bHLH transcription factor 6
RGD ID: 11732015
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); nervous system development (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hairy and enhancer of split 6; transcription cofactor HES-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213140,871,107 - 140,872,884 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B140,886,074 - 140,887,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B125,471,244 - 125,473,025 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B244,321,070 - 244,322,237 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HES6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213140,871,107 - 140,872,884 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B140,886,074 - 140,887,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B125,471,244 - 125,473,025 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B244,321,070 - 244,322,237 (-)NCBIpanpan1.1PanPan1.1panPan2
HES6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,238,267 - 238,240,038 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,238,267 - 238,240,662 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,146,908 - 239,148,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,811,647 - 238,813,409 (-)NCBINCBI36Build 36hg18NCBI36
Build 342238,928,909 - 238,930,670NCBI
Celera2232,859,462 - 232,861,235 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2230,937,958 - 230,939,843 (-)NCBIHuRef
CHM1_12239,152,761 - 239,154,534 (-)NCBICHM1_1
T2T-CHM13v2.02238,728,009 - 238,729,780 (-)NCBIT2T-CHM13v2.0
Hes6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,339,204 - 91,342,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,339,205 - 91,341,760 (-)EnsemblGRCm39 Ensembl
GRCm38191,411,483 - 91,414,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,411,483 - 91,414,038 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,308,060 - 93,309,799 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,241,889 - 93,243,628 (-)NCBIMGSCv36mm8
Celera194,348,702 - 94,350,441 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.12NCBI
Hes6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,449,375 - 99,451,343 (-)NCBIGRCr8
mRatBN7.2992,001,849 - 92,003,562 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl992,001,841 - 92,003,559 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,428,608 - 100,430,321 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,564,366 - 105,566,079 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,927,959 - 103,929,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,549,698 - 98,551,438 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,549,705 - 98,551,438 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,225,746 - 98,227,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,639,890 - 90,641,596 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1990,844,659 - 90,846,365 (-)NCBI
Celera989,542,889 - 89,544,595 (-)NCBICelera
Cytogenetic Map9q36NCBI
Hes6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,373,370 - 2,374,272 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,373,241 - 2,374,827 (+)NCBIChiLan1.0ChiLan1.0
HES6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,710,694 - 48,713,392 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2549,206,100 - 49,207,791 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02549,096,318 - 49,098,006 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2549,096,963 - 49,097,953 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12548,971,418 - 48,973,122 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02548,760,071 - 48,761,750 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02548,992,417 - 48,994,109 (-)NCBIUU_Cfam_GSD_1.0
Hes6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,670,176 - 190,671,955 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936525267,753 - 269,527 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936525267,791 - 269,511 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HES6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,785,810 - 137,787,694 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115137,785,808 - 137,787,689 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,217,871 - 152,219,649 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HES6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110124,263,894 - 124,266,345 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10124,264,456 - 124,265,542 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604075,152,402 - 75,154,849 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hes6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,354,501 - 3,355,378 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,353,997 - 3,355,484 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034955484   ⟹   XP_034811375
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213140,871,107 - 140,872,883 (-)NCBI
NHGRI_mPanPan12B140,886,074 - 140,887,850 (-)NCBI
Mhudiblu_PPA_v02B125,471,244 - 125,473,018 (-)NCBI
RefSeq Acc Id: XM_034955485   ⟹   XP_034811376
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213140,871,963 - 140,872,884 (-)NCBI
NHGRI_mPanPan12B140,886,930 - 140,887,851 (-)NCBI
Mhudiblu_PPA_v02B125,472,100 - 125,473,025 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034811375 (Get FASTA)   NCBI Sequence Viewer  
  XP_034811376 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034811375   ⟸   XM_034955484
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034811376   ⟸   XM_034955485
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene HES6 ENTREZGENE