TTC23L (tetratricopeptide repeat domain 23 like) - Rat Genome Database

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Gene: TTC23L (tetratricopeptide repeat domain 23 like) Pan paniscus
Analyze
Symbol: TTC23L
Name: tetratricopeptide repeat domain 23 like
RGD ID: 11730704
Description: ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 23-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,436,262 - 75,499,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,470,535 - 75,532,771 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,750,710 - 80,810,923 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TTC23L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,436,262 - 75,499,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,470,535 - 75,532,771 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,750,710 - 80,810,923 (-)NCBIpanpan1.1PanPan1.1panPan2
TTC23L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,839,164 - 34,925,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,838,833 - 34,900,511 (+)EnsemblGRCh38hg38GRCh38
GRCh37534,839,269 - 34,925,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,875,026 - 34,935,324 (+)NCBINCBI36Build 36hg18NCBI36
Celera534,721,072 - 34,781,799 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,787,782 - 34,847,729 (+)NCBIHuRef
CHM1_1534,841,468 - 34,901,927 (+)NCBICHM1_1
T2T-CHM13v2.0535,086,287 - 35,172,714 (+)NCBIT2T-CHM13v2.0
Ttc23l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,497,309 - 10,559,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,500,188 - 10,558,754 (-)EnsemblGRCm39 Ensembl
GRCm381510,497,223 - 10,558,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,500,102 - 10,558,668 (-)EnsemblGRCm38mm10GRCm38
MGSCv371510,433,702 - 10,488,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,444,827 - 10,504,789 (-)NCBIMGSCv36mm8
Celera1510,305,843 - 10,360,380 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Ttc23l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,203,825 - 61,265,453 (-)NCBIGRCr8
mRatBN7.2259,476,666 - 59,538,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,476,669 - 59,538,282 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0260,492,314 - 60,538,551 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,492,256 - 60,538,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0284,136,482 - 84,197,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,857,877 - 59,916,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera259,134,717 - 59,197,145 (+)NCBICelera
Cytogenetic Map2q16NCBI
Ttc23l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542619,987,093 - 20,020,364 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542619,985,179 - 20,029,902 (+)NCBIChiLan1.0ChiLan1.0
TTC23L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,395,974 - 73,455,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,400,166 - 73,453,498 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha473,012,406 - 73,071,821 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,901,731 - 73,961,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,904,118 - 73,959,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,649,284 - 73,708,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,772,742 - 73,831,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,305,963 - 74,365,826 (-)NCBIUU_Cfam_GSD_1.0
Ttc23l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,663,609 - 224,721,156 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365186,641,805 - 6,706,937 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC23L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,443,661 - 20,478,632 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,441,253 - 20,491,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,343,863 - 21,402,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC23L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,732,841 - 33,793,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,739,203 - 33,783,489 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607124,031,988 - 24,085,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc23l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475920,022,653 - 20,052,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034960197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034960198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034960199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034960200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034960201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034960202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034960203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055112460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004671584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034960197   ⟹   XP_034816088
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,447,898 - 75,497,490 (-)NCBI
NHGRI_mPanPan1573,601,530 - 73,651,122 (-)NCBI
Mhudiblu_PPA_v0575,480,274 - 75,531,212 (-)NCBI
RefSeq Acc Id: XM_034960200   ⟹   XP_034816091
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,447,898 - 75,499,618 (-)NCBI
NHGRI_mPanPan1573,601,530 - 73,653,250 (-)NCBI
Mhudiblu_PPA_v0575,480,274 - 75,532,771 (-)NCBI
RefSeq Acc Id: XM_034960201   ⟹   XP_034816092
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,447,898 - 75,499,618 (-)NCBI
NHGRI_mPanPan1573,601,530 - 73,653,250 (-)NCBI
Mhudiblu_PPA_v0575,480,274 - 75,532,771 (-)NCBI
RefSeq Acc Id: XM_055112460   ⟹   XP_054968435
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,440,949 - 75,497,282 (-)NCBI
NHGRI_mPanPan1573,594,643 - 73,650,914 (-)NCBI
RefSeq Acc Id: XR_008625390
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,436,262 - 75,497,347 (-)NCBI
NHGRI_mPanPan1573,584,931 - 73,650,979 (-)NCBI
RefSeq Acc Id: XR_008625391
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,437,069 - 75,499,618 (-)NCBI
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBI
RefSeq Acc Id: XR_008625392
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,437,069 - 75,499,618 (-)NCBI
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBI
RefSeq Acc Id: XR_008625393
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,437,071 - 75,497,490 (-)NCBI
NHGRI_mPanPan1573,584,931 - 73,651,122 (-)NCBI
RefSeq Acc Id: XR_008625394
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,437,070 - 75,497,316 (-)NCBI
NHGRI_mPanPan1573,584,931 - 73,650,948 (-)NCBI
RefSeq Acc Id: XR_008625395
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2475,437,069 - 75,499,618 (-)NCBI
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034816088 (Get FASTA)   NCBI Sequence Viewer  
  XP_034816091 (Get FASTA)   NCBI Sequence Viewer  
  XP_034816092 (Get FASTA)   NCBI Sequence Viewer  
  XP_054968435 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034816092   ⟸   XM_034960201
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034816091   ⟸   XM_034960200
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034816088   ⟸   XM_034960197
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054968435   ⟸   XM_055112460
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
NCBI Gene TTC23L ENTREZGENE