RBM4 (RNA binding motif protein 4)

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Gene: RBM4 (RNA binding motif protein 4) Pan paniscus

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Symbol:

RBM4 (Ensembl: RBM14)

Name:

RNA binding motif protein 4 (Ensembl:RNA binding motif protein 14)

RGD ID:

11730561

Description:

ENCODES a protein that exhibits cyclin binding (ortholog); miRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN cap-independent translational initiation (ortholog); circadian regulation of gene expression (ortholog); circadian regulation of translation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); intellectual disability (ortholog); myoepithelioma (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC100976317; LOC100977984; RBM14; RNA binding motif protein 14; RNA-binding protein 14; RNA-binding protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	67,864,630 - 67,894,452 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	68,884,652 - 68,953,231 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	61,996,221 - 62,026,007 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	65,319,464 - 65,349,183 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	65,298,404 - 65,349,183 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

intellectual disability (ISO)

myoepithelioma (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (IEA)

apoptotic process (IEA)

cap-independent translational initiation (ISO)

centriole assembly (IEA)

circadian regulation of gene expression (ISO)

circadian regulation of translation (ISO)

enteroendocrine cell differentiation (ISO)

entrainment of circadian clock by photoperiod (ISO)

gastrulation (IEA)

glucose homeostasis (ISO)

insulin secretion involved in cellular response to glucose stimulus (ISO)

IRES-dependent translational initiation of linear mRNA (ISO)

miRNA-mediated gene silencing by inhibition of translation (ISO)

mRNA processing (IEA)

mRNA splicing, via spliceosome (IEA)

negative regulation of centriole replication (IEA)

negative regulation of translation (ISO)

negative regulation of translation in response to stress (ISO)

negative regulation of translational initiation (ISO)

pancreas development (ISO)

positive regulation of muscle cell differentiation (ISO)

positive regulation of transcription by RNA polymerase II (IEA)

positive regulation of translation (ISO)

regulation of alternative mRNA splicing, via spliceosome (ISO)

regulation of gene expression (ISO)

regulation of insulin receptor signaling pathway (ISO)

regulation of nucleocytoplasmic transport (ISO)

regulation of response to DNA integrity checkpoint signaling (IEA)

response to arsenic-containing substance (ISO)

RNA splicing (IEA)

transcription initiation-coupled chromatin remodeling (IEA)

Cellular Component

cytoplasm (IEA)

cytoplasmic stress granule (ISO)

cytosol (ISO)

nuclear speck (IEA)

nucleolus (IEA)

nucleoplasm (ISO)

nucleus (IEA)

perinuclear region of cytoplasm (ISO)

transcription regulator complex (IEA)

Molecular Function

cyclin binding (ISO)

miRNA binding (ISO)

mRNA 3'-UTR binding (ISO)

mRNA binding (IEA)

obsolete nuclear receptor coactivator activity (IEA)

pre-mRNA binding (ISO)

pre-mRNA intronic binding (ISO)

pre-mRNA intronic pyrimidine-rich binding (ISO)

protein binding (ISO)

RNA binding (IEA)

splicing factor binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RBM4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	67,864,630 - 67,894,452 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	68,884,652 - 68,953,231 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	61,996,221 - 62,026,007 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	65,319,464 - 65,349,183 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	65,298,404 - 65,349,183 (+)	Ensembl	panpan1.1		panPan2

RBM4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	66,638,703 - 66,668,380 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	66,638,667 - 66,668,374 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	66,406,174 - 66,435,851 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	66,162,714 - 66,170,516 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	66,162,777 - 66,170,514	NCBI
Celera	11	63,731,742 - 63,740,539 (+)	NCBI		Celera
Cytogenetic Map	11	q13.2	NCBI
HuRef	11	62,734,477 - 62,764,214 (+)	NCBI		HuRef
CHM1_1	11	66,289,814 - 66,319,584 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	66,634,947 - 66,664,627 (+)	NCBI		T2T-CHM13v2.0

Rbm4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	4,834,321 - 4,844,037 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	4,834,321 - 4,843,929 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	4,784,293 - 4,794,009 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	4,784,293 - 4,793,901 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	4,784,293 - 4,793,877 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	4,784,293 - 4,793,877 (-)	NCBI		MGSCv36	mm8
Celera	19	4,655,503 - 4,665,087 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.11	NCBI

Rbm4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	211,507,845 - 211,516,907 (-)	NCBI		GRCr8
mRatBN7.2	1	202,078,442 - 202,087,506 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	202,085,279 - 202,105,380 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	210,431,563 - 210,440,647 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	217,523,875 - 217,532,939 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	210,214,899 - 210,223,962 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	220,038,403 - 220,049,756 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	220,039,734 - 220,048,966 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	226,903,520 - 226,913,901 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	207,394,470 - 207,403,393 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	207,547,786 - 207,556,823 (-)	NCBI
Celera	1	199,618,949 - 199,628,010 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

RBM14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	5,776,539 - 5,784,337 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	5,776,535 - 5,784,337 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103221203
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	7,604,440 - 7,638,536 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	104,891,337 - 104,925,391 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003828694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003828695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003828696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008954132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034933093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055094556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055094557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057299180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_008620212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_008620213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000043182 ⟹ ENSPPAP00000020389

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,298,404 - 65,309,152 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043210 ⟹ ENSPPAP00000020416

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,298,537 - 65,325,406 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043213 ⟹ ENSPPAP00000020419

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,298,537 - 65,325,406 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043224 ⟹ ENSPPAP00000020430

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,298,537 - 65,308,478 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043236 ⟹ ENSPPAP00000020442

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,298,744 - 65,308,478 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043276 ⟹ ENSPPAP00000020482

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,319,456 - 65,327,711 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043281 ⟹ ENSPPAP00000020487

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,319,458 - 65,349,183 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043283 ⟹ ENSPPAP00000020489

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,319,484 - 65,330,915 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043287 ⟹ ENSPPAP00000020493

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,319,490 - 65,327,711 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000043294 ⟹ ENSPPAP00000020500

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	65,320,987 - 65,323,357 (+)	Ensembl

RefSeq Acc Id:

XM_003828694 ⟹ XP_003828742

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,630 - 67,872,505 (+)	NCBI
NHGRI_mPanPan1	11	68,907,452 - 68,915,304 (+)	NCBI
Mhudiblu_PPA_v0	11	61,996,221 - 62,004,066 (+)	NCBI
PanPan1.1	11	65,319,482 - 65,327,711 (+)	NCBI

Sequence:

show sequence

TTCCACAGCGTCCTGGCCGCGAGGGGGGGTGGTGCTTGGGAGGTTAGAGGGAGACACCTAGAGT
GAACGGCAAAATGGAGCGCGGAATACTGTCTGGCTGTGCACGTGGAGGTGGCGAAATGTGGAAG
CTTAACGAAGTTGGCGCCATGAAGCTACAGACTGCTACCCCGGGGCTCTAGCTCGCTCCGCTTA
ATGGCGGGCCGCACCCCGCCGGCGAAGCCCACGTTTGTAGGTCCGCCCTCACGCTGATCTCTTG
CCCAATCAGCGAGTTCGGCTTCGCGAGGTTGGTGCCCATTGGCTTTCGCATAAAAGCTCCGAGG
TTACAGACGTTTCCACCTCTTGCCGGCCTCTTAGGTAATTGGCGTCCGTGGTAACCAATCAGGA
AGAGGATCTGCGGGAACGCCGGCCTTTTACTTTCTTGAGTGGCCAATCCGGTTGTAGGCTCACC
TCCCCCTTCTACCAGAGCACTGCTGCGGCCGCCGCCATTTTAGCGTTTTGTCAGAAGCGTCCGC
GCCGCGAGGAGGAGGCCCTGCTGGTTTCTGTGCGGGCTCTTGTCAGGATGGTGAAGCTGTTCAT
CGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAG
GTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTG
AGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAG
CAAGAATAAGAGCAAAACCTCAACAAAGTTGCATGTGGGCAACATCAGTCCCACCTGCACCAAT
AAGGAGCTTCGAGCCAAGTTTGAGGAGTATGGTCCGGTCATCGAATGTGACATCGTGAAAGATT
ATGCCTTCGTACACATGGAACGGGCAGAGGATGCAGTGGAGGCCATCAGGGGCCTTGATAACAC
AGAGTTTCAAGGCAAACGAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCGCCCGGG
ATGGGAGACCAGAGCGGCTGCTATCGGTGCGGGAAAGAGGGGCACTGGTCCAAAGAGTGTCCGA
TAGATCGTTCAGGCCGCGTGGCAGACTTGACCGAGCAATATAATGAGCAATACGGAGCAGTGCG
TACGCCTTACACCATGAGCTATGGGGATTCATTGTATTACAACAACGCGTACGGAGCGCTCGAT
GCCTACTACAAGCGCTGCCGTGCTGCCCGGTCCTATGAGGCAGTGGCAGCTGCAGCTGCCTCCG
TGTATAATTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGTCCAGAATACAGCCATGGCCAG
TCACCTCACCTCCACCTCTCTCGATCCCTACGATAGACACCTGTTGCCGACCTCAGGAGCTGCT
GCCACAGCTGCTGCTGCAGCAGCAGCCGCTGCTGCTGTTACTGCAGCTTCCACTTCATATTACG
GGCGGGATCGGAGCCCCCTGCGTCGCGCTACAGCCCCAGTCCCCACTGTTGGAGAGGGCTACGG
TTACGGGCATGAGAGTGAGTTGTCCCAAGCTTCAGCAGCCGCGCGGAATTCTCTGTACGACATG
GCCCGGTATGAGCGGGAGCAGTATGCCGATCGGGCGCGGTACTCAGCCTTTTAAAGCTTGAGGT
GGGATGTGTGTGGGCTGAAATTCCGAGCTGCGGTTGTGCATGAGAATACACCCTTCGTGGTACC
CCATCTCCGGGACGTTCTCGGCTCTGTGCGTTCAGTCCCTCAGGAACCGTGGACCTTAATTTAC
CTTGCTAAGTTCAGACCTTCTCTTCCTTTCCTTTCCTTTCCTCTCCTGCCCATTTTCCTGTTCT
TCTGTCCTTCAATACTTCTGTAGCTTCCCATTCATGTTCTGTTCTCCCAGCAGGCCTCATTGTG
TGCAGAAACTGTGGTGGGGGCTGTGCTGTCTCCTCCCTGCCTCGTGCCTCCTGCGGCTGTTGGA
TTTGGGAATGACCTTGGTGAGAGTCTCACTGCTCCAGGGTCTCTTTTTGGTCCAAAGGCTAGAC
CTATAGAGTTGGATCACTTTTTTTCTTTCCGGTGAAATAAATGGTTTTTCAACTTAG

hide sequence

RefSeq Acc Id:

XM_003828695 ⟹ XP_003828743

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,630 - 67,872,505 (+)	NCBI
NHGRI_mPanPan1	11	68,907,452 - 68,915,304 (+)	NCBI
Mhudiblu_PPA_v0	11	61,996,221 - 62,004,066 (+)	NCBI
PanPan1.1	11	65,319,493 - 65,327,711 (+)	NCBI

Sequence:

show sequence

CCTGGCCGCGAGGGGGGGTGGTGCTTGGGAGGTTAGAGGGAGACACCTAGAGTGAACGGCAAAA
TGGAGCGCGGAATACTGTCTGGCTGTGCACGTGGAGGTGGCGAAATGTGGAAGCTTAACGAAGT
TGGCGCCATGAAGCTACAGACTGCTACCCCGGGGCTCTAGCTCGCTCCGCTTAATGGCGGGCCG
CACCCCGCCGGCGAAGCCCACGTTTGTAGGTCCGCCCTCACGCTGATCTCTTGCCCAATCAGCG
AGTTCGGCTTCGCGAGGTTGGTGCCCATTGGCTTTCGCATAAAAGCTCCGAGGTTACAGACGTT
TCCACCTCTTGCCGGCCTCTTAGGTAATTGGCGTCCGTGGTAACCAATCAGGAAGAGGATCTGC
GGGAACGCCGGCCTTTTACTTTCTTGAGTGGCCAATCCGGTTGTAGGCTCACCTCCCCCTTCTA
CCAGAGCACTGCTGCGGCCGCCGCCATTTTAGCGTTTTGTCAGAAGCGTCCGCGCCGCGAGGAG
GAGGCCCTGCTGGTTTCTGTGCGGGCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGC
CCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGCTGGAATG
TGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTGAGGATGCCATA
CGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGCAAGAATAAGA
GCAAAACCTCAACAAAGTTGCATGTGGGCAACATCAGTCCCACCTGCACCAATAAGGAGCTTCG
AGCCAAGTTTGAGGAGTATGGTCCGGTCATCGAATGTGACATCGTGAAAGATTATGCCTTCGTA
CACATGGAACGGGCAGAGGATGCAGTGGAGGCCATCAGGGGCCTTGATAACACAGAGTTTCAAG
GTGGGATGTGTGTGGGCTGAAATTCCGAGCTGCGGTTGTGCATGAGAATACACCCTTCGTGGTA
CCCCATCTCCGGGACGTTCTCGGCTCTGTGCGTTCAGTCCCTCAGGAACCGTGGACCTTAATTT
ACCTTGCTAAGTTCAGACCTTCTCTTCCTTTCCTTTCCTTTCCTCTCCTGCCCATTTTCCTGTT
CTTCTGTCCTTCAATACTTCTGTAGCTTCCCATTCATGTTCTGTTCTCCCAGCAGGCCTCATTG
TGTGCAGAAACTGTGGTGGGGGCTGTGCTGTCTCCTCCCTGCCTCGTGCCTCCTGCGGCTGTTG
GATTTGGGAATGACCTTGGTGAGAGTCTCACTGCTCCAGGGTCTCTTTTTGGTCCAAAGGCTAG
ACCTATAGAGTTGGATCACTTTTTTTCTTTCCGGTGAAATAAATGGTTTTTCAACTTAG

hide sequence

RefSeq Acc Id:

XM_008954132 ⟹ XP_008952380

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,630 - 67,875,967 (+)	NCBI
NHGRI_mPanPan1	11	68,907,452 - 68,918,765 (+)	NCBI
Mhudiblu_PPA_v0	11	61,996,221 - 62,007,531 (+)	NCBI
PanPan1.1	11	65,319,486 - 65,330,915 (+)	NCBI

Sequence:

show sequence

ACAGCGTCCTGGCCGCGAGGGGGGGTGGTGCTTGGGAGGTTAGAGGGAGACACCTAGAGTGAAC
GGCAAAATGGAGCGCGGAATACTGTCTGGCTGTGCACGTGGAGGTGGCGAAATGTGGAAGCTTA
ACGAAGTTGGCGCCATGAAGCTACAGACTGCTACCCCGGGGCTCTAGCTCGCTCCGCTTAATGG
CGGGCCGCACCCCGCCGGCGAAGCCCACGTTTGTAGGTCCGCCCTCACGCTGATCTCTTGCCCA
ATCAGCGAGTTCGGCTTCGCGAGGTTGGTGCCCATTGGCTTTCGCATAAAAGCTCCGAGGTTAC
AGACGTTTCCACCTCTTGCCGGCCTCTTAGGTAATTGGCGTCCGTGGTAACCAATCAGGAAGAG
GATCTGCGGGAACGCCGGCCTTTTACTTTCTTGAGTGGCCAATCCGGTTGTAGGCTCACCTCCC
CCTTCTACCAGAGCACTGCTGCGGCCGCCGCCATTTTAGCGTTTTGTCAGAAGCGTCCGCGCCG
CGAGGAGGAGGCCCTGCTGGTTTCTGTGCGGGCTCTTGTCAGGATGGTGAAGCTGTTCATCGGA
AACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGC
TGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTGAGGA
TGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGCAAG
AATAAGAGCAAAACCTCAACAAAGTTGCATGTGGGCAACATCAGTCCCACCTGCACCAATAAGG
AGCTTCGAGCCAAGTTTGAGGAGTATGGTCCGGTCATCGAATGTGACATCGTGAAAGATTATGC
CTTCGTACACATGGAACGGGCAGAGGATGCAGTGGAGGCCATCAGGGGCCTTGATAACACAGAG
TTTCAAGACATCCAGCTCTGTCACCCAAGCTGCAGTGTGGTGGCATGATTGTAGCTCACTGTAA
CTTTGAACTCCTGAGCTCAAGGGATCCTCCCGCCTTGGCCTCCCAGAGTTTTTGCAGGGACTAT
ATGTGAGCCACTGCGTCTGGTCAAAATGTAGTTTTTCAAGAGTAATGCTTTAATAAACTGATTT
TTTTTCCCCCATA

hide sequence

RefSeq Acc Id:

XM_055094556 ⟹ XP_054950531

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,682 - 67,872,505 (+)	NCBI
NHGRI_mPanPan1	11	68,907,542 - 68,915,304 (+)	NCBI

RefSeq Acc Id:

XM_055094557 ⟹ XP_054950532

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,665 - 67,894,452 (+)	NCBI
NHGRI_mPanPan1	11	68,907,505 - 68,934,835 (+)	NCBI

RefSeq Acc Id:

XM_057299180 ⟹ XP_057155163

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,630 - 67,894,452 (+)	NCBI
NHGRI_mPanPan1	11	68,907,452 - 68,934,835 (+)	NCBI

RefSeq Acc Id:

XM_063608594 ⟹ XP_063464664

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,669 - 67,875,967 (+)	NCBI

RefSeq Acc Id:

XM_063608595 ⟹ XP_063464665

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,675 - 67,872,505 (+)	NCBI

RefSeq Acc Id:

XR_008620212

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,630 - 67,894,452 (+)	NCBI
NHGRI_mPanPan1	11	68,907,452 - 68,935,264 (+)	NCBI

RefSeq Acc Id:

XR_008620213

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	67,864,630 - 67,892,033 (+)	NCBI
NHGRI_mPanPan1	11	68,907,452 - 68,934,805 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003828742	(Get FASTA)	NCBI Sequence Viewer
	XP_003828743	(Get FASTA)	NCBI Sequence Viewer
	XP_008952380	(Get FASTA)	NCBI Sequence Viewer
	XP_054950531	(Get FASTA)	NCBI Sequence Viewer
	XP_054950532	(Get FASTA)	NCBI Sequence Viewer
	XP_057155163	(Get FASTA)	NCBI Sequence Viewer
	XP_063464664	(Get FASTA)	NCBI Sequence Viewer
	XP_063464665	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000003609.1
	ENSPPAP00000003612.1
	ENSPPAP00000020416.1
	ENSPPAP00000020419.1
	ENSPPAP00000020442.1
	ENSPPAP00000020482.1
	ENSPPAP00000020487.1
	ENSPPAP00000020489
	ENSPPAP00000020489.1
	ENSPPAP00000020493.1
	ENSPPAP00000020500.1

RefSeq Acc Id:	XP_003828742 ⟸ XM_003828694
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AT28 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN INVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI RGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNE QYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAASVYNYAEQTLSQLPQVQ NTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPT VGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRARYSAF hide sequence

RefSeq Acc Id:	XP_008952380 ⟸ XM_008954132
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9AZH1 (UniProtKB/TrEMBL), A0A2R8ZFH9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN INVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI RGLDNTEFQDIQLCHPSCSVVA hide sequence

RefSeq Acc Id:	XP_003828743 ⟸ XM_003828695
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9ATG4 (UniProtKB/TrEMBL), A0A2R8ZF18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN INVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI RGLDNTEFQGGMCVG hide sequence

Ensembl Acc Id:

ENSPPAP00000020430 ⟸ ENSPPAT00000043224

Ensembl Acc Id:

ENSPPAP00000020389 ⟸ ENSPPAT00000043182

Ensembl Acc Id:

ENSPPAP00000020419 ⟸ ENSPPAT00000043213

Ensembl Acc Id:

ENSPPAP00000020416 ⟸ ENSPPAT00000043210

Ensembl Acc Id:

ENSPPAP00000020493 ⟸ ENSPPAT00000043287

Ensembl Acc Id:

ENSPPAP00000020442 ⟸ ENSPPAT00000043236

Ensembl Acc Id:

ENSPPAP00000020487 ⟸ ENSPPAT00000043281

Ensembl Acc Id:

ENSPPAP00000020482 ⟸ ENSPPAT00000043276

Ensembl Acc Id:

ENSPPAP00000020489 ⟸ ENSPPAT00000043283

Ensembl Acc Id:

ENSPPAP00000020500 ⟸ ENSPPAT00000043294

RefSeq Acc Id:	XP_054950532 ⟸ XM_055094557
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AT33 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054950531 ⟸ XM_055094556
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AT28 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_057155163 ⟸ XM_057299180
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AT33 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063464664 ⟸ XM_063608594
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9AZH1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063464665 ⟸ XM_063608595
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9ATG4 (UniProtKB/TrEMBL)

Protein Domains

CCHC-type RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000015125	UniProtKB/TrEMBL
	ENSPPAG00000033403	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000016598.1	UniProtKB/TrEMBL
	ENSPPAT00000016606.1	UniProtKB/TrEMBL
	ENSPPAT00000043210.1	UniProtKB/TrEMBL
	ENSPPAT00000043213.1	UniProtKB/TrEMBL
	ENSPPAT00000043236.1	UniProtKB/TrEMBL
	ENSPPAT00000043276.1	UniProtKB/TrEMBL
	ENSPPAT00000043281.1	UniProtKB/TrEMBL
	ENSPPAT00000043283.1	UniProtKB/TrEMBL
	ENSPPAT00000043287.1	UniProtKB/TrEMBL
	ENSPPAT00000043294.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	Zinc finger, CCHC-type	UniProtKB/TrEMBL
InterPro	Euk_RNA-bind_prot	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM14_RRM1	UniProtKB/TrEMBL
	RBM14_RRM2	UniProtKB/TrEMBL
	RBM4_RRM1	UniProtKB/TrEMBL
	RBM4_RRM2	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/TrEMBL
	Znf_CCHC_sf	UniProtKB/TrEMBL
KEGG Report	pps:100977984	UniProtKB/TrEMBL
NCBI Gene	RBM4	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M-RELATED	UniProtKB/TrEMBL
	OS02G0815200 PROTEIN	UniProtKB/TrEMBL
	RNA-BINDING PROTEIN 14	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
	zf-CCHC	UniProtKB/TrEMBL
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
	ZF_CCHC	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
	ZnF_C2HC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
	SSF57756	UniProtKB/TrEMBL
UniProt	A0A2R8ZF18	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZFH9	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9ASV5_PANPA	UniProtKB/TrEMBL
	A0A2R9ASY3_PANPA	UniProtKB/TrEMBL
	A0A2R9AT28	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AT33	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9ATG4	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AXE9_PANPA	UniProtKB/TrEMBL
	A0A2R9AZA7_PANPA	UniProtKB/TrEMBL
	A0A2R9AZH1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-03-13	RBM4	RNA binding motif protein 4	LOC100977984	RNA-binding protein 4	Symbol and/or name change	5135510	APPROVED
2023-04-25	LOC100977984	RNA-binding protein 4	RBM4	RNA binding motif protein 4	Symbol and/or name change	5135510	APPROVED
2023-04-20	RBM4	RNA binding motif protein 4	LOC100976317	RNA-binding protein 14	Data merged from RGD:11999350	737654	PROVISIONAL
2020-07-01	RBM4	RNA binding motif protein 4	LOC100977984	RNA-binding protein 4	Symbol and/or name change	5135510	APPROVED
2018-05-08	LOC100977984	RNA-binding protein 4	RBM4	RNA binding motif protein 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar