CD46 (CD46 molecule) - Rat Genome Database

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Gene: CD46 (CD46 molecule) Pan paniscus
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Symbol: CD46
Name: CD46 molecule
RGD ID: 11728306
Description: ENCODES a protein that exhibits cadherin binding (ortholog); endopeptidase activity (ortholog); INVOLVED IN negative regulation of complement activation, alternative pathway (ortholog); negative regulation of complement activation, classical pathway (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Acute Necrotizing Pancreatitis (ortholog); atypical hemolytic-uremic syndrome (ortholog); FOUND IN acrosomal vesicle (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11188,138,616 - 188,182,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1188,031,758 - 188,182,046 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01183,330,423 - 183,373,916 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CD46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11188,138,616 - 188,182,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1188,031,758 - 188,182,046 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01183,330,423 - 183,373,916 (+)NCBIMhudiblu_PPA_v0panPan3
CD46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1207,752,054 - 207,795,513 (+)EnsemblGRCh38hg38GRCh38
GRCh381207,752,038 - 207,795,516 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371207,925,383 - 207,968,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,992,025 - 206,035,481 (+)NCBINCBI36hg18NCBI36
Build 341204,313,796 - 204,357,253NCBI
Celera1181,155,844 - 181,199,337 (+)NCBI
Cytogenetic Map1q32.2NCBI
HuRef1178,599,655 - 178,643,144 (+)NCBIHuRef
CHM1_11209,197,783 - 209,241,259 (+)NCBICHM1_1
Cd46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,721,279 - 194,781,149 (-)NCBIGRCm39mm39
GRCm39 Ensembl1194,719,134 - 194,774,557 (-)Ensembl
GRCm381195,038,971 - 195,098,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,036,826 - 195,092,249 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,868,094 - 196,918,442 (-)NCBIGRCm37mm9NCBIm37
MGSCv361196,742,624 - 196,792,972 (-)NCBImm8
Celera1201,941,710 - 201,991,369 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.41NCBI
Cd46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.213106,575,586 - 106,606,325 (-)NCBI
Rnor_6.0 Ensembl13113,787,349 - 113,817,995 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.013113,786,525 - 113,818,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013118,334,938 - 118,366,928 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413110,972,812 - 111,003,407 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113111,166,859 - 111,197,455 (-)NCBI
Celera13105,999,615 - 106,030,131 (-)NCBICelera
Cytogenetic Map13q27NCBI
Cd46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540643,002,817 - 43,034,555 (+)NCBIChiLan1.0ChiLan1.0
LOC102156626
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,552,121 - 6,581,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha76,114,430 - 6,144,443 (+)NCBI
ROS_Cfam_1.076,240,211 - 6,268,997 (+)NCBI
UMICH_Zoey_3.176,173,438 - 6,203,217 (+)NCBI
UNSW_CanFamBas_1.076,275,610 - 6,305,657 (+)NCBI
UU_Cfam_GSD_1.076,316,510 - 6,346,562 (+)NCBI
Cd46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934467,898,802 - 67,934,998 (-)NCBI
SpeTri2.0NW_0049365575,136,784 - 5,175,543 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19135,025,439 - 135,078,910 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29148,564,569 - 148,568,279 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,650,825 - 21,693,898 (-)NCBI
ChlSab1.1 Ensembl2521,655,969 - 21,693,878 (-)Ensembl
Vero_WHO_p1.0NW_02366605522,261,845 - 22,304,942 (-)NCBI
Cd46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248074,040,639 - 4,074,631 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003831198   ⟹   XP_003831246
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11188,138,616 - 188,182,046 (+)NCBI
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003831199   ⟹   XP_003831247
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11188,138,616 - 188,182,046 (+)NCBI
Mhudiblu_PPA_v01183,330,425 - 183,373,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003831200   ⟹   XP_003831248
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11188,138,616 - 188,182,046 (+)NCBI
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008956595   ⟹   XP_008954843
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11188,138,616 - 188,182,046 (+)NCBI
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008956596   ⟹   XP_008954844
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11188,138,616 - 188,182,046 (+)NCBI
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008956597   ⟹   XP_008954845
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11188,138,616 - 188,182,046 (+)NCBI
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034945721   ⟹   XP_034801612
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
RefSeq Acc Id: XM_034945729   ⟹   XP_034801620
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
RefSeq Acc Id: XM_034945735   ⟹   XP_034801626
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
RefSeq Acc Id: XM_034945739   ⟹   XP_034801630
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
RefSeq Acc Id: XM_034945742   ⟹   XP_034801633
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
RefSeq Acc Id: XM_034945746   ⟹   XP_034801637
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01183,330,423 - 183,373,916 (+)NCBI
RefSeq Acc Id: XM_034945748   ⟹   XP_034801639
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01183,330,424 - 183,373,916 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_008954843   ⟸   XM_008956595
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003831248   ⟸   XM_003831200
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008954844   ⟸   XM_008956596
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_003831246   ⟸   XM_003831198
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008954845   ⟸   XM_008956597
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_003831247   ⟸   XM_003831199
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_034801637   ⟸   XM_034945746
- Peptide Label: isoform X12
RefSeq Acc Id: XP_034801612   ⟸   XM_034945721
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034801626   ⟸   XM_034945735
- Peptide Label: isoform X8
RefSeq Acc Id: XP_034801620   ⟸   XM_034945729
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034801639   ⟸   XM_034945748
- Peptide Label: isoform X13
RefSeq Acc Id: XP_034801633   ⟸   XM_034945742
- Peptide Label: isoform X11
RefSeq Acc Id: XP_034801630   ⟸   XM_034945739
- Peptide Label: isoform X10


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000008479 Ensembl, ENTREZGENE
NCBI Gene CD46 ENTREZGENE