ZNF853 (zinc finger protein 853) - Rat Genome Database

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Gene: ZNF853 (zinc finger protein 853) Pan paniscus
Analyze
Symbol: ZNF853
Name: zinc finger protein 853
RGD ID: 11727562
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); PcG protein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,048,091 - 11,057,144 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,372,801 - 59,381,853 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,820,366 - 6,829,549 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,809,338 - 6,816,068 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl76,809,646 - 6,867,095 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF853
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,048,091 - 11,057,144 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,372,801 - 59,381,853 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,820,366 - 6,829,549 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,809,338 - 6,816,068 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl76,809,646 - 6,867,095 (+)Ensemblpanpan1.1panPan2
ZNF853
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,615,610 - 6,624,290 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,615,610 - 6,624,290 (+)EnsemblGRCh38hg38GRCh38
GRCh3776,655,241 - 6,663,921 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,621,511 - 6,630,446 (+)NCBINCBI36Build 36hg18NCBI36
Celera76,071,259 - 6,079,652 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,527,588 - 6,535,978 (+)NCBIHuRef
CHM1_176,655,147 - 6,663,538 (+)NCBICHM1_1
T2T-CHM13v2.076,734,792 - 6,743,476 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,702,580 - 6,710,967 (+)NCBI
Zfp853
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,269,283 - 143,279,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,272,793 - 143,279,378 (-)EnsemblGRCm39 Ensembl
GRCm385143,285,999 - 143,293,982 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,287,038 - 143,293,623 (-)EnsemblGRCm38mm10GRCm38
MGSCv375144,049,267 - 144,054,083 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,552,731 - 143,565,957 (-)NCBIMGSCv36mm8
MGSCv365142,412,801 - 142,417,405 (-)NCBIMGSCv36mm8
Celera5140,331,942 - 140,336,754 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.06NCBI
Zfp853
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,379,552 - 16,390,082 (+)NCBIGRCr8
mRatBN7.21211,266,124 - 11,276,492 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,269,414 - 11,275,731 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01213,323,102 - 13,331,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,323,547 - 13,328,510 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,363,799 - 15,370,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,620,148 - 11,635,656 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,062,971 - 13,071,166 (+)NCBICelera
Cytogenetic Map12p11NCBI
Znf853
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,082,557 - 13,093,355 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,085,415 - 13,092,382 (-)NCBIChiLan1.0ChiLan1.0
ZNF853
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,952,447 - 11,959,500 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,576,913 - 13,584,437 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,954,197 - 11,961,721 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,954,471 - 11,961,721 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,829,846 - 11,837,368 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,808,885 - 11,816,411 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,036,239 - 12,043,773 (+)NCBIUU_Cfam_GSD_1.0
Znf853
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,146,206 - 140,153,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765138,121 - 143,165 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936765137,266 - 151,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF853
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,586,809 - 4,591,506 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,585,474 - 4,592,434 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF853
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,826,679 - 15,835,222 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,826,717 - 15,835,270 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666102197,533 - 206,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf853
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,725,098 - 30,729,480 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,724,765 - 30,730,213 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048726   ⟹   ENSPPAP00000025896
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl76,809,646 - 6,867,095 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048727   ⟹   ENSPPAP00000025897
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl76,809,646 - 6,817,150 (+)Ensembl
RefSeq Acc Id: XM_034963641   ⟹   XP_034819532
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,048,091 - 11,056,845 (-)NCBI
NHGRI_mPanPan1759,372,801 - 59,381,555 (-)NCBI
Mhudiblu_PPA_v076,820,366 - 6,829,097 (-)NCBI
RefSeq Acc Id: XM_034963642   ⟹   XP_034819533
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,048,091 - 11,056,658 (-)NCBI
NHGRI_mPanPan1759,372,801 - 59,381,355 (-)NCBI
Mhudiblu_PPA_v076,820,366 - 6,829,097 (-)NCBI
RefSeq Acc Id: XM_055114930   ⟹   XP_054970905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,048,091 - 11,056,664 (-)NCBI
NHGRI_mPanPan1759,372,801 - 59,381,360 (-)NCBI
RefSeq Acc Id: XM_055114931   ⟹   XP_054970906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,048,091 - 11,056,663 (-)NCBI
NHGRI_mPanPan1759,372,801 - 59,381,359 (-)NCBI
RefSeq Acc Id: XM_055114932   ⟹   XP_054970907
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,048,091 - 11,057,144 (-)NCBI
NHGRI_mPanPan1759,372,801 - 59,381,853 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034819532   ⟸   XM_034963641
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034819533   ⟸   XM_034963642
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000025896   ⟸   ENSPPAT00000048726
RefSeq Acc Id: ENSPPAP00000025897   ⟸   ENSPPAT00000048727
RefSeq Acc Id: XP_054970907   ⟸   XM_055114932
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054970905   ⟸   XM_055114930
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054970906   ⟸   XM_055114931
- Peptide Label: isoform X2
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036068 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048726.1 UniProtKB/TrEMBL
  ENSPPAT00000048727.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF853 ENTREZGENE
PANTHER GASTRULA ZINC FINGER PROTEIN XLCGF26.1-LIKE-RELATED UniProtKB/TrEMBL
  GENE 12845-RELATED UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9B9Y2_PANPA UniProtKB/TrEMBL
  A0A2R9BC75_PANPA UniProtKB/TrEMBL