COL6A2 (collagen type VI alpha 2 chain) - Rat Genome Database
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Gene: COL6A2 (collagen type VI alpha 2 chain) Pan paniscus
Analyze
Symbol: COL6A2
Name: collagen type VI alpha 2 chain
RGD ID: 11726974
Description: ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN response to glucose (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); Bethlem myopathy (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-2(VI) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12145,696,865 - 45,731,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,710,491 - 45,730,895 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02132,442,859 - 32,478,076 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
COL6A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12145,696,865 - 45,731,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,710,491 - 45,730,895 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02132,442,859 - 32,478,076 (+)NCBIMhudiblu_PPA_v0panPan3
COL6A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2146,098,097 - 46,132,849 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2146,098,112 - 46,132,848 (+)EnsemblGRCh38hg38GRCh38
GRCh382146,098,071 - 46,132,849 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372147,518,033 - 47,552,763 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh372147,518,026 - 47,552,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,342,461 - 46,377,191 (+)NCBINCBI36hg18NCBI36
Build 342146,342,469 - 46,374,147NCBI
Celera2132,629,797 - 32,665,343 (+)NCBI
Cytogenetic Map21q22.3NCBI
HuRef2132,899,133 - 32,933,853 (+)NCBIHuRef
CHM1_12147,078,809 - 47,113,491 (+)NCBICHM1_1
Col6a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,431,590 - 76,459,464 (-)NCBIGRCm39mm39
GRCm381076,595,756 - 76,623,630 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,595,762 - 76,623,630 (-)EnsemblGRCm38mm10GRCm38
MGSCv371076,058,501 - 76,086,149 (-)NCBIGRCm37mm9NCBIm37
MGSCv361076,039,478 - 76,067,030 (-)NCBImm8
Celera1077,640,875 - 77,668,353 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.32NCBI
Col6a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22012,021,676 - 12,049,425 (+)NCBI
Rnor_6.0 Ensembl2012,773,427 - 12,801,180 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02012,773,472 - 12,801,179 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02014,931,484 - 14,959,214 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,436,783 - 12,464,512 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12012,445,140 - 12,461,566 (+)NCBI
Celera2013,520,111 - 13,547,903 (+)NCBICelera
Cytogenetic Map20p12NCBI
Col6a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,575,170 - 42,600,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,575,677 - 42,600,967 (+)NCBIChiLan1.0ChiLan1.0
Col6a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936778394,985 - 430,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL6A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.213218,600,867 - 218,616,309 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL6A2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,724,355 - 89,758,389 (+)NCBI
ChlSab1.1 Ensembl289,737,003 - 89,758,425 (+)Ensembl
Col6a2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474531,246,458 - 31,272,403 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000035964   ⟹   ENSPPAP00000013294
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2145,710,491 - 45,730,895 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000035971   ⟹   ENSPPAP00000013302
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2145,710,491 - 45,727,834 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000035977   ⟹   ENSPPAP00000013307
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2145,710,491 - 45,727,271 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000035986   ⟹   ENSPPAP00000013316
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2145,723,665 - 45,730,895 (+)Ensembl
RefSeq Acc Id: XM_034948259   ⟹   XP_034804150
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02132,442,860 - 32,478,076 (+)NCBI
RefSeq Acc Id: XM_034948260   ⟹   XP_034804151
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02132,442,859 - 32,475,036 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034804150 (Get FASTA)   NCBI Sequence Viewer  
  XP_034804151 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034804151   ⟸   XM_034948260
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034804150   ⟸   XM_034948259
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000013294   ⟸   ENSPPAT00000035964
RefSeq Acc Id: ENSPPAP00000013316   ⟸   ENSPPAT00000035986
RefSeq Acc Id: ENSPPAP00000013307   ⟸   ENSPPAT00000035977
RefSeq Acc Id: ENSPPAP00000013302   ⟸   ENSPPAT00000035971
Protein Domains
VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000013294 UniProtKB/TrEMBL
  ENSPPAP00000013302 UniProtKB/TrEMBL
  ENSPPAP00000013307 UniProtKB/TrEMBL
  ENSPPAP00000013316 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035964 UniProtKB/TrEMBL
  ENSPPAT00000035971 UniProtKB/TrEMBL
  ENSPPAT00000035977 UniProtKB/TrEMBL
  ENSPPAT00000035986 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene COL6A2 ENTREZGENE
Pfam Collagen UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A2R9A7P8_PANPA UniProtKB/TrEMBL
  A0A2R9ACP6_PANPA UniProtKB/TrEMBL
  A0A2R9ACU9_PANPA UniProtKB/TrEMBL
  A0A2R9ACV4_PANPA UniProtKB/TrEMBL