RARS1 (arginyl-tRNA synthetase 1) - Rat Genome Database

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Gene: RARS1 (arginyl-tRNA synthetase 1) Pan paniscus
Analyze
Symbol: RARS1
Name: arginyl-tRNA synthetase 1
RGD ID: 11726039
Description: ENCODES a protein that exhibits arginine binding (ortholog); arginine-tRNA ligase activity (ortholog); ATP binding (ortholog); INVOLVED IN arginyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hypomyelinating leukodystrophy 9 (ortholog); immunodeficiency 40 (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arginine--tRNA ligase, cytoplasmic; arginyl-tRNA synthetase; RARS
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24163,649,100 - 163,682,236 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15161,788,645 - 161,821,781 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05163,851,644 - 163,884,787 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15170,616,819 - 170,649,655 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5170,616,819 - 170,649,655 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RARS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24163,649,100 - 163,682,236 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15161,788,645 - 161,821,781 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05163,851,644 - 163,884,787 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15170,616,819 - 170,649,655 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5170,616,819 - 170,649,655 (+)Ensemblpanpan1.1panPan2
RARS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385168,486,471 - 168,519,301 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5168,486,451 - 168,519,301 (+)EnsemblGRCh38hg38GRCh38
GRCh375167,913,476 - 167,946,306 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365167,846,041 - 167,878,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 345167,846,040 - 167,878,885NCBI
Celera5163,948,808 - 163,981,683 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5163,012,238 - 163,045,058 (+)NCBIHuRef
CHM1_15167,346,530 - 167,379,378 (+)NCBICHM1_1
T2T-CHM13v2.05169,021,262 - 169,054,094 (+)NCBIT2T-CHM13v2.0
Rars1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,699,207 - 35,725,355 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,699,208 - 35,725,333 (-)EnsemblGRCm39 Ensembl
GRCm381135,808,381 - 35,834,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,808,381 - 35,834,506 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,621,883 - 35,648,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,651,806 - 35,677,929 (-)NCBIMGSCv36mm8
Celera1139,591,462 - 39,617,635 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1121.96NCBI
Rars1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81020,774,804 - 20,799,251 (-)NCBIGRCr8
mRatBN7.21020,270,744 - 20,295,192 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1020,270,483 - 20,295,196 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1025,021,858 - 25,046,283 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01024,510,383 - 24,534,811 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01019,994,537 - 20,018,847 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01020,633,630 - 20,658,074 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1020,633,632 - 20,658,100 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01020,505,807 - 20,530,334 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41020,721,170 - 20,745,484 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11020,722,223 - 20,746,536 (-)NCBI
Celera1019,889,464 - 19,913,910 (-)NCBICelera
Cytogenetic Map10q12NCBI
Rars1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540821,536,426 - 21,574,683 (+)NCBIChiLan1.0ChiLan1.0
RARS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1443,237,499 - 43,260,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl443,237,499 - 43,260,677 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha443,193,938 - 43,217,200 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0443,659,249 - 43,682,521 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl443,650,992 - 43,682,460 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1443,428,969 - 43,452,203 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0443,623,543 - 43,646,768 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0444,129,367 - 44,152,642 (-)NCBIUU_Cfam_GSD_1.0
Rars1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721397,268,905 - 97,302,352 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936622884,423 - 918,650 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936622884,324 - 917,964 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RARS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1655,373,727 - 55,412,112 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11655,373,739 - 55,412,076 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21659,959,187 - 59,972,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RARS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12370,711,435 - 70,746,000 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2370,711,016 - 70,745,884 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660347,934,274 - 7,970,520 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rars1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473321,487,847 - 21,535,797 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473321,487,847 - 21,535,487 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000064739   ⟹   ENSPPAP00000041813
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5170,616,819 - 170,649,655 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000064740   ⟹   ENSPPAP00000041814
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5170,616,873 - 170,624,932 (+)Ensembl
RefSeq Acc Id: XM_003810913   ⟹   XP_003810961
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24163,649,100 - 163,682,236 (+)NCBI
NHGRI_mPanPan15161,788,645 - 161,821,781 (+)NCBI
Mhudiblu_PPA_v05163,851,644 - 163,884,787 (+)NCBI
PanPan1.15170,616,819 - 170,649,655 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810961 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000041813
  ENSPPAP00000041813.1
  ENSPPAP00000041814.1
RefSeq Acc Id: XP_003810961   ⟸   XM_003810913
- UniProtKB: A0A2R9CLD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000041813   ⟸   ENSPPAT00000064739
RefSeq Acc Id: ENSPPAP00000041814   ⟸   ENSPPAT00000064740

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043505 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064739.1 UniProtKB/TrEMBL
  ENSPPAT00000064740.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1360.70 UniProtKB/TrEMBL
  3.40.50.620 UniProtKB/TrEMBL
InterPro aa-tRNA-synth_I_CS UniProtKB/TrEMBL
  Arg-tRNA-ligase UniProtKB/TrEMBL
  Arg-tRNA-synth_N UniProtKB/TrEMBL
  Arg-tRNA-synth_N_sf UniProtKB/TrEMBL
  ArgRS_core UniProtKB/TrEMBL
  DALR_anticod-bd UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
  tRNAsynth_Ia_anticodon-bd UniProtKB/TrEMBL
KEGG Report pps:100970857 UniProtKB/TrEMBL
NCBI Gene RARS ENTREZGENE
PANTHER ARGININE--TRNA LIGASE, CYTOPLASMIC UniProtKB/TrEMBL
  PTHR11956 UniProtKB/TrEMBL
Pfam Arg_tRNA_synt_N UniProtKB/TrEMBL
  DALR_1 UniProtKB/TrEMBL
  tRNA-synt_1d UniProtKB/TrEMBL
PRINTS TRNASYNTHARG UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_I UniProtKB/TrEMBL
SMART Arg_tRNA_synt_N UniProtKB/TrEMBL
  DALR_1 UniProtKB/TrEMBL
Superfamily-SCOP Nucleotidylyl transferase UniProtKB/TrEMBL
  SSF47323 UniProtKB/TrEMBL
  SSF55190 UniProtKB/TrEMBL
UniProt A0A2R9CIN9_PANPA UniProtKB/TrEMBL
  A0A2R9CLD1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-23 RARS1  arginyl-tRNA synthetase 1  RARS  arginyl-tRNA synthetase  Symbol and/or name change 5135510 APPROVED