C3H3orf62 (chromosome 3 C3orf62 homolog) - Rat Genome Database
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Gene: C3H3orf62 (chromosome 3 C3orf62 homolog) Pan paniscus
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Symbol: C3H3orf62
Name: chromosome 3 C3orf62 homolog
RGD ID: 11725989
Description: ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: chromosome 3 open reading frame, human C3orf62; uncharacterized protein C3orf62 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,273,460 - 50,279,995 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,273,460 - 50,279,995 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,191,640 - 49,199,806 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
C3H3orf62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,273,460 - 50,279,995 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,273,460 - 50,279,995 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,191,640 - 49,199,806 (-)NCBIMhudiblu_PPA_v0panPan3
C3orf62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,268,596 - 49,277,232 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,268,596 - 49,277,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,306,029 - 49,314,665 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,281,223 - 49,289,456 (-)NCBINCBI36hg18NCBI36
Celera349,269,717 - 49,277,952 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,363,351 - 49,371,827 (-)NCBIHuRef
CHM1_1349,258,841 - 49,267,310 (-)NCBICHM1_1
1700102P08Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,270,023 - 108,275,416 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,270,004 - 108,288,133 (+)Ensembl
GRCm389108,392,824 - 108,411,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,392,805 - 108,410,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,295,165 - 108,300,101 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,250,929 - 108,255,858 (+)NCBImm8
Celera9108,002,041 - 108,006,978 (+)NCBICelera
Cytogenetic Map9F2NCBI
LOC498675
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,080,032 - 109,084,650 (+)NCBI
Rnor_6.0 Ensembl8117,170,620 - 117,175,235 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,170,620 - 117,175,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,518,983 - 116,523,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,382,743 - 108,387,341 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
LOC102011802
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555321,243,732 - 1,245,499 (-)NCBIChiLan1.0ChiLan1.0
C20H3orf62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,953,764 - 39,956,754 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,953,285 - 39,959,112 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH3orf62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529934,641 - 940,858 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13H3orf62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,826,945 - 31,904,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,840,281 - 31,848,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,075,788 - 35,079,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH3orf62
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,660,873 - 10,672,712 (-)NCBI
ChlSab1.1 Ensembl2210,666,310 - 10,671,639 (-)Ensembl
CUNH3orf62
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,249,440 - 3,252,795 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000044910   ⟹   ENSPPAP00000022103
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,273,460 - 50,279,995 (-)Ensembl
RefSeq Acc Id: XM_008971655   ⟹   XP_008969903
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,273,462 - 50,279,323 (-)NCBI
Mhudiblu_PPA_v0349,191,640 - 49,199,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008971658   ⟹   XP_008969906
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1350,273,460 - 50,279,995 (-)NCBI
Mhudiblu_PPA_v0349,191,640 - 49,199,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034956457   ⟹   XP_034812348
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0349,191,640 - 49,199,212 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008969903 (Get FASTA)   NCBI Sequence Viewer  
  XP_008969906 (Get FASTA)   NCBI Sequence Viewer  
  XP_034812348 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008969906   ⟸   XM_008971658
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008969903   ⟸   XM_008971655
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034812348   ⟸   XM_034956457
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000022103   ⟸   ENSPPAT00000044910


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034256 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000022103 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044910 UniProtKB/TrEMBL
InterPro DUF4712 UniProtKB/TrEMBL
NCBI Gene C3H3orf62 ENTREZGENE
PANTHER PTHR36680 UniProtKB/TrEMBL
Pfam DUF4712 UniProtKB/TrEMBL
UniProt A0A2R9AYE6_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 C3H3orf62  chromosome 3 C3orf62 homolog    chromosome 3 open reading frame, human C3orf62  Symbol and/or name change 5135510 APPROVED