C2H3orf62 (chromosome 2 C3orf62 homolog) - Rat Genome Database

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Gene: C2H3orf62 (chromosome 2 C3orf62 homolog) Pan paniscus
Analyze
Symbol: C2H3orf62 (Ensembl: C3orf62)
Name: chromosome 2 C3orf62 homolog (Ensembl:chromosome 3 open reading frame 62)
RGD ID: 11725989
Description: INVOLVED IN spermatogenesis (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); genetic disease (ortholog); Pierson syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C3H3orf62; chromosome 3 C3orf62 homolog; chromosome 3 open reading frame, human C3orf62; uncharacterized protein C3orf62 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,246,081 - 49,253,627 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,249,907 - 49,258,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,191,640 - 49,199,806 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,273,460 - 50,279,995 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,273,460 - 50,279,995 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
C2H3orf62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,246,081 - 49,253,627 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,249,907 - 49,258,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,191,640 - 49,199,806 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,273,460 - 50,279,995 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,273,460 - 50,279,995 (-)Ensemblpanpan1.1panPan2
C3orf62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,268,596 - 49,277,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,268,596 - 49,277,232 (-)EnsemblGRCh38hg38GRCh38
GRCh37349,306,029 - 49,314,665 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,281,223 - 49,289,456 (-)NCBINCBI36Build 36hg18NCBI36
Celera349,269,717 - 49,277,952 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,363,351 - 49,371,827 (-)NCBIHuRef
CHM1_1349,258,841 - 49,267,310 (-)NCBICHM1_1
T2T-CHM13v2.0349,296,676 - 49,305,312 (-)NCBIT2T-CHM13v2.0
1700102P08Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,270,023 - 108,275,416 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,270,004 - 108,288,133 (+)EnsemblGRCm39 Ensembl
GRCm389108,392,824 - 108,411,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,392,805 - 108,410,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,295,165 - 108,300,101 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,250,929 - 108,255,858 (+)NCBIMGSCv36mm8
Celera9108,002,041 - 108,006,978 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.3NCBI
C8h3orf62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,958,583 - 117,963,137 (+)NCBIGRCr8
mRatBN7.28109,080,032 - 109,084,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,036,030 - 109,097,895 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,707,326 - 114,711,961 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,906,657 - 112,911,292 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,749,304 - 110,753,940 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,170,620 - 117,175,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,170,620 - 117,175,235 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,518,983 - 116,523,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,382,743 - 108,387,341 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
CUNH3orf62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555321,243,732 - 1,245,499 (-)NCBIChiLan1.0ChiLan1.0
C20H3orf62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,953,285 - 39,959,112 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,953,764 - 39,956,754 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,871,616 - 39,877,439 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02040,310,105 - 40,315,927 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,310,581 - 40,313,572 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,677,051 - 39,682,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,080,919 - 40,086,749 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,360,345 - 40,366,176 (+)NCBIUU_Cfam_GSD_1.0
CUNH3orf62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,174,098 - 64,180,383 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529936,848 - 940,367 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936529934,641 - 940,858 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13H3orf62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,845,055 - 31,848,482 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,840,281 - 31,848,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,075,788 - 35,079,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH3orf62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,660,873 - 10,672,712 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,666,310 - 10,671,639 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041156,354,459 - 156,382,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH3orf62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,249,482 - 3,251,966 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,249,440 - 3,252,795 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000044910   ⟹   ENSPPAP00000022103
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl350,273,460 - 50,279,995 (-)Ensembl
RefSeq Acc Id: XM_008971655   ⟹   XP_008969903
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2249,246,081 - 49,253,627 (-)NCBI
NHGRI_mPanPan1349,249,907 - 49,258,395 (-)NCBI
Mhudiblu_PPA_v0349,191,640 - 49,199,180 (-)NCBI
PanPan1.1350,273,462 - 50,279,323 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008971658   ⟹   XP_008969906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2249,246,081 - 49,253,208 (-)NCBI
NHGRI_mPanPan1349,249,908 - 49,258,395 (-)NCBI
Mhudiblu_PPA_v0349,191,640 - 49,199,806 (-)NCBI
PanPan1.1350,273,460 - 50,279,995 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008969903 (Get FASTA)   NCBI Sequence Viewer  
  XP_008969906 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022103.1
RefSeq Acc Id: XP_008969906   ⟸   XM_008971658
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AYE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008969903   ⟸   XM_008971655
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AYE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000022103   ⟸   ENSPPAT00000044910


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034256 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044910.1 UniProtKB/TrEMBL
InterPro DUF4712 UniProtKB/TrEMBL
NCBI Gene C3H3orf62 ENTREZGENE
PANTHER HYPOTHETICAL LOC498675 UniProtKB/TrEMBL
  PTHR36680 UniProtKB/TrEMBL
Pfam DUF4712 UniProtKB/TrEMBL
UniProt A0A2R9AYE6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 C2H3orf62  chromosome 2 C3orf62 homolog  C3H3orf62  chromosome 3 C3orf62 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C3H3orf62  chromosome 3 C3orf62 homolog    chromosome 3 open reading frame, human C3orf62  Symbol and/or name change 5135510 APPROVED