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Gene: LIN54 (lin-54 DREAM MuvB core complex component) Pan paniscus

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Symbol:

LIN54

Name:

lin-54 DREAM MuvB core complex component

RGD ID:

11725255

Description:

ENCODES a protein that exhibits DNA binding (inferred); minor groove of adenine-thymine-rich DNA binding (inferred); transcription regulatory region nucleic acid binding (inferred); INVOLVED IN nucleosome organization (ortholog); ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); FOUND IN nucleus (inferred); RNA polymerase II transcription repressor complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lin-54 homolog; protein lin-54 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	47,060,208 - 47,146,279 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	47,249,393 - 47,335,806 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	41,192,653 - 41,278,730 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	47,045,043 - 47,131,091 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	47,046,277 - 47,131,091 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 4q21 deletion syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nucleosome organization (IEA,ISO)

regulation of DNA-templated transcription (IEA)

Cellular Component

nucleus (IEA)

RNA polymerase II transcription repressor complex (IEA)

Molecular Function

DNA binding (IEA)

minor groove of adenine-thymine-rich DNA binding (IEA)

protein binding (ISO)

transcription regulatory region nucleic acid binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LIN54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	47,060,208 - 47,146,279 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	47,249,393 - 47,335,806 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	41,192,653 - 41,278,730 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	47,045,043 - 47,131,091 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	47,046,277 - 47,131,091 (+)	Ensembl	panpan1.1		panPan2

LIN54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	82,924,603 - 83,012,941 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	82,909,973 - 83,012,926 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	83,845,756 - 83,934,094 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	84,065,151 - 84,151,006 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	81,136,312 - 81,224,592 (-)	NCBI		Celera
Cytogenetic Map	4	q21.22	NCBI
HuRef	4	79,586,333 - 79,674,722 (-)	NCBI		HuRef
CHM1_1	4	83,822,194 - 83,910,549 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	86,253,801 - 86,342,186 (-)	NCBI		T2T-CHM13v2.0

Lin54
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	100,589,892 - 100,648,506 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	100,589,900 - 100,648,493 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	100,442,033 - 100,500,639 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	100,441,918 - 100,500,639 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	100,871,052 - 100,929,658 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	100,682,502 - 100,740,941 (-)	NCBI		MGSCv36	mm8
Celera	5	97,767,830 - 97,826,649 (-)	NCBI		Celera
Cytogenetic Map	5	E4	NCBI
cM Map	5	48.48	NCBI

Lin54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	9,434,093 - 9,514,091 (+)	NCBI		GRCr8
mRatBN7.2	14	9,129,775 - 9,188,244 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	9,130,336 - 9,187,790 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	9,117,967 - 9,159,651 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	10,417,843 - 10,459,523 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	9,114,446 - 9,156,126 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	10,770,072 - 10,828,115 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	10,786,399 - 10,828,106 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	10,398,080 - 10,439,960 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	10,383,795 - 10,439,950 (+)	NCBI
Celera	14	9,254,128 - 9,295,581 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

Lin54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955474	6,613,661 - 6,660,899 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955474	6,600,766 - 6,660,904 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIN54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	6,876,111 - 6,940,754 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	6,878,187 - 6,941,268 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	34,943,820 - 35,009,627 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	6,896,796 - 6,962,825 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	6,896,805 - 6,960,655 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	6,967,885 - 7,033,859 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	6,836,618 - 6,902,413 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	33,063,699 - 33,129,725 (+)	NCBI		UU_Cfam_GSD_1.0

Lin54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	5,405,363 - 5,481,497 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936738	1,568,585 - 1,643,454 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936738	1,568,786 - 1,643,500 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIN54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	135,330,919 - 135,398,263 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	135,330,868 - 135,398,274 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	144,625,750 - 144,693,415 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIN54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	31,323,792 - 31,406,194 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	31,326,174 - 31,404,045 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	9,893,341 - 9,984,470 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lin54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624900	12,174 - 66,648 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624900	12,511 - 66,582 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003832253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003832254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063603774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000063210 ⟹ ENSPPAP00000040295

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	47,046,277 - 47,131,091 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000063213 ⟹ ENSPPAP00000040298

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	47,072,405 - 47,127,582 (+)	Ensembl

RefSeq Acc Id:

XM_003832253 ⟹ XP_003832301

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,062,312 - 47,146,279 (+)	NCBI
NHGRI_mPanPan1	4	47,251,497 - 47,335,806 (+)	NCBI
Mhudiblu_PPA_v0	4	41,194,766 - 41,278,730 (+)	NCBI
PanPan1.1	4	47,046,277 - 47,131,091 (+)	NCBI

Sequence:

show sequence

AGGGGGAGGTTACTGGTGGTGGCGGCGGCGGCGGCGGCCCGGGCTCCGGCTGTCGGGGAAGCTG
CTGAGCTGTGATGGTGATGACGAGGTGAAAATGGCGGATCTTTCGAAATACAATCCCGGCCCCT
GACATACCAGAGGCGGCGGCGACGGCGACGTCGCCACCCCGGCTCCCTTCTCGGTCCCCGGGTA
CCCTGGAGCGCTCCAGTTTGGACAAACTGGGAAAGGAAGCTGCTGGCCAGAGCTATCGTGCACG
GGCAAAACAAGCCCCGCCGGGGCTCGGGATTGCCCAGGACCTTCTGGAGCCCCTACTTCGGAGC
CCGAGGGAGGAGAAAGCGGCAGCCGCTGGAGTGCCTGATCAACTTTCTAGCGGGAGAACGATCA
TGGAGGTGGTGCCAGCTGAGGTGAATAGTTTGCTTCCAGAGGAAATAATGGACACTGGTATAAC
TTTAGTGGATGATGATAGTATTGAGGCTGTTATTGTTTCATCCCCAATTCCCATGGAGACAGAA
CTGGAAGAAATTGTCAACATAAATTCTACTGGTGACTCTACAGCCACGCCCATTTCCACGGAAC
CAATCACAGTGTACAGTAACCACACTAACCAAGTTGCAGTGAATACCACAATTACTAAAGCAGA
TTCTAATACCACAGTGAAACCAGCTTTTCCAAGTGGCCTTCAAAAACTTGGTGCTCAGACTCCT
GTGACTATATCAGCCAATCAGATTATTTTAAACAAAGTATCACAGACATCTGATCTTAAACTTG
GCAATCAGACCCTTAAACCAGATGGACAGAAGTTAATTTTAACAACTTTGGGCAAGTCTGGTTC
ACCAATTGTTTTAGCACTACCCCATAGCCAACTACCCCAGGCTCAGAAAGTTACAACTCAGGCC
CAGTCAGGAGATGCTAAGTTACCACCGCAGCAAATTAAAGTAGTTACCATTGGAGGGAGGCCAG
AGGTGAAACCTGTCATTGGTGTCTCAGCATTGACCCCAGGAAGTCAACTGATTAATACTACAAC
TCAGCCCTCTGTGTTACAGACCCAACAGTTAAAAACAGTACAGATTGCTAAGAAGCCTCGAACG
CCAACCTCTGGTCCAGTAATCACGAAGCTGATCTTTGCAAAACCAATTAATAGTAAAGCAGTTA
CAGGACAGACAACTCAAGTTTCACCACCAGTCATTGCAGGTAGGGTTCTTTCACAGTCTACTCC
CGGAACTCCATCAAAGACCATAACAATATCTGAAAGTGGTGTTATTGGATCAACTTTAAATTCT
ACAACACAGACACCAAATAAAATAGCCATCTCACCTTTGAAATCGCCAAATAAGGCAGTGAAAT
CAACTGTGCAGACCATCACTGTTGGAGGAGTGAGCACATCACAGTTTAAGACAATTATTCCTCT
GGCAACTGCTCCCAATGTCCAGCAGATTCAAGTGCCTGGAAGCAAGTTTCATTATGTCCGACTT
GTTACTGCCACATCAGCCAGTAGCTCAACCCAGCCAGTTAGTCAGAATCCCAGTACAAACACTC
AGCCTCTTCAGCAAGCAAAGCCAGTGGTTGTTAATACAACCCCAGTGCGGATGTCAGTTCCAAT
TGTCTCAGCTCAGGCTGTCAAACAAGTTGTTCCAAAACCAATCAATCCAACTTCACAAATAGTA
ACTACTAGCCAGCCACAGCAACGGCTTATCATGCCTGCCACACCACTGCCACAGATCCAGCCCA
ACCTCACTAACCTGCCACCAGGCACTGTCCTGGCACCAGCTCCGGGAACAGGGAATGTGGGTTA
TGCAGTGCTTCCAGCTCAGTATGTTACTCAGCTACAGCAATCTTCATATGTATCAATAGCAAGC
AACTCTACCTTTACTGGAACATCTGGTATCCAGACCCAGGCACGGCTTCCATTCAATGGCATAA
TCCCATCAGAGTCGGCCAGTCGGCCCCGAAAGCCCTGTAATTGTACAAAATCACTGTGTTTGAA
ATTGTATTGTGATTGCTTTGCAAATGGTGAATTTTGCAACAACTGCAATTGTACTAATTGTTAC
AACAATTTGGAACATGAAAATGAAAGGCAAAAGGCAATAAAGGCATGCCTTGACAGAAATCCAG
AAGCCTTTAAGCCTAAGATAGGGAAAGGAAAGGAGGGAGAATCTGATCGACGTCATAGCAAAGG
GTGTAATTGCAAACGATCAGGATGTCTTAAAAACTACTGTGAATGCTATGAGGCAAAAATAATG
TGTTCCTCAATATGCAAATGTATTGGCTGTAAGAATTTTGAAGAAAGCCCGGAAAGGAAGACAT
TGATGCATTTGGCAGATGCAGCTGAAGTAAGGGTACAGCAACAAACAGCAGCCAAGACGAAGTT
ATCCTCTCAAATTTCAGACTTGCTTACTAGGCCAACACCAGCTTTAAATAGTGGAGGCGGAAAA
TTGCCATTTACATTTGTAACTAAGGAAGTAGCTGAAGCCACATGTAATTGCCTCCTTGCCCAGG
CAGAGCAGGCAGACAAGAAGGGAAAATCAAAGGCAGCAGCGGAACGGATGATACTTGAGGAATT
CGGACGATGTTTGATGAGTGTCATCAACTCTGCAGGAAAGGCAAAAAGTGACCCTTGTGCCATG
AATTGCTAACTCTTGCACAAAAGACTGATAAATGGAACTGTACAGAAAATTTAAGGTGCAGGGA
CACTTGATTTTCTGGAAGAAAAACAATTACTGTATTTTAATTCAGTCCTTGTTTTAAAAGACCT
GAAATTATAATACTGAAGGAGAAGAAATTTTAAATGAGGAAATTAGTACATTTTAAATCTTAGT
TAAATCTGCTTATGCCCCTTCTAAATTGAATTTTTCTTTATTATATAGATTTTTTAATTTGCTT
GGGTTTCTTAAGAATTAGATGTTCTCTTTCTGATACCTTTGACAAAAAATGTTTATAAATTCAT
ATAATTTATAATGTATGGTGTTGTATGACTTTGTTAATAGAAAAGCCAAAGCAGCAGTGGTTAG
CACCCATTCTTTGGGACTTGATCTAGAATATCTGCAGACAGAATGTTACATAAACAAATTCTTA
TGAAACACATTCAAATGACATTTTGTATTTAGAAAAGGACTATCTTTTAAAGAAAAAGCAGCCT
TTTAGGGCAGATTCTGGAATAATATCCTGTTGTCACTTTGGGAATGTCAGAAGGGGAAACAATC
CCCAGGCACACTAAAAAGTTTTTAAAGTTATTTAAAAAACATAAAATATTAAAGGACAGTAAAT
CTCAGAGGATGGGCAATGTGTTTCTATAATAAGGAAAGGCTAACAGATGCTCTGGGCTGTCTCC
ATTTTCTTTCAAAGAGGTGGTATGTATTTGAAGTAATAAATTGTCAAAGTGATTACTGGGTACT
ATTAAAATGATAGGTGGATATAAATGGAAGTAAACATTATGTAGTGATAATATAGAACCTCACA
TAGTAATCAAGTTTAAAATTTGGCATGGGTGGAGAAACAAAGAATAGGGAAGCTGCAAAAGATG
AATTTAGAGAAGTTTTCATCTATACAATCAATTATTTTTACAGACTTTTTTTTTTTGAGACGGA
GTCTCGCTGTGTAGCCCAGGCTGGAGTGCAATGGTGAGATCTCAGCTCACTGCAATGCCTCTGC
CTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGTGTAGCTGGGACTACAGGTGCATGCC
ACCATGCCCAGCTCATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATG
GTCTCGATCTCCTGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCA
TAAGCCGCCGTGCCCGGCCCTTTTTATAGACTTTTGAACTAAGAGGTTTCAAACCAAATCGCAA
CTCTTACTTGATTTACAGAAATGGGCCTCCTAACAAAATTTTCAAAATTGTGGTGGGATTTCTT
TTTATAAGGGAAGTTTAATATGGCATTATTTTCAGCCAGTGATTTGGAAGGTCTGTTTTCCTAT
AATTACTAAAATAACCTAAATCATTTTCAGTATTCAAAAACTCTATGAATTTAAGAGCCTGTTG
TGACAGGACTCTTGATTTTATGACAAGAAAAAACCATGTTGGAATTCAGGCATTTTGTTAGGTA
CCTTAATCATCAGTAATTAGTATATGATTATTTCATTTCCTACAAGGACTCTATAGTTGTATGT
ATTAAGTGTGTATATATGTTCATATGAACACGCAAGATATAGGCAATAGAAATTAAGTAATCCA
AAAGAGGATTCCGTTATTCACTAAAGTATCTTCCTTTTAAATTTGGATTTATAAAATCATAGTG
CAGTAACTTTAAATGTAGATAGTTCAAACATTCTTAGCACCTCAATCCAGTATGTTTAATTAAA
ATTTGTATAAATGTAAATTAGTGTAAGAGGGTAAAATAATAATCAAGTTATTTTTCAAAAGATT
GCAATAAGTTTTTGGTCTAAACTTAAACTTTGTTCATTTTGTACATACTCTGTGTTAATTCTAA
TTGCACCTTTGTGATGTGTATTTATATACAGTGTGCAGAAAATGTTCGTGAAATTTTGATTACA
ATTGTAGATTATGTATGATGGCATTGCTTACGAATGTTTTGCTTGTAAAAAAATTTCAAGGTGC
AATCAAATGCTACTAGTTTTTCTGATTTTCAAAAATCTATCTAAAATATTAAGCCTTTTCCTTC
CTGTGTAGTACTTACTAAATAACTTTTTGTATTCAGGCATTTGCATCAAATTGCTGAACAAGAT
GAATAGCCACATTAATTCAATGATTTTAAAAGACTATTTGGGGAGGGTTGGGTATATAATTTTT
TAGCTCTATTTACATCCCAAAGTAGAAAGATTAAATTTATATTTACTAGAGCTATTCAAAGAAT
ACACTTTTCTATATTGTAAAAACAGGACAGCAAAGCAAATCATACAGAAAATAAACATTTATAC
TATTCTGTAAAAAAAAGGTTTTGCATTTTTTCTTTAGTATAATAACACCACTTTATTAACCATT
TAATATGCAAAAAACCTTTTAAATTATCTGAAGTAAATTTGACATTACTTCTGAAAACACACAA
CTAAAAAATTCTATCATTTTGCTCAGTTATTACTAACATAAATTGCTTTGAAATGAGAATATGT
CTTCTCTTTTTTTCCCCACTGTTTCTTTTAAGAGCAGAAACTCAGCCGGGCATGGTGGCTCACG
CCTGTAATTCCAGCACTTTGGGAGGTCAAGGCGGGTGAATCACTTGAGTCCAGGAGTTCTAGAC
CAGCCCAGGCTACATGGTGAAACCCTGTCTCTACTAAAAATATAAAAAAATTAACTGCGTGTGG
TGGCGCACACCTGCAGTCCTCGCTACTTTGAAGGTTGAGGTGGGAGGATCGCCTGAGCCTGCAG
AGGTTGAGGCTGTAGTGAGTCAAAATTACACCACTGCACTCCAGCCTGGCAATCAGAGTGAGAC
CTTGTCTCAAAAACAAAATCAAAAATACCTAGAAAATCAATCTACTCTGTCTTTTAATGTGAAA
TGTTCTTATGATAGCTATCTTTCTTAGTTTCCTTTTTTCTGAAGCACTAAACACAACCTGTAGG
TCTTATCTCTGGGGTCTGGGAAACAGAACCTTAATGTTACAGGTACAAAAGCAAACAGAGTGAT
TAGTTCCCCATTTTCTGGTAGTGGACAACTGACATTTTTTCAATCTTATGTAAAATGTGAATAA
AAATAATTTTAGAAAAGTTATCTATTTTTATTGTTCTGTAACACAAATAGTTAAGAAAATGAAT
ACTTGTTATGTAAATGAAGCTTCACAGCAGGACCTCCGGCCATAACTTTGATCATGTTGTATCT
CGTAAGCATTTTATATAGGAATTCTGGTGTGGCTACCCAAAGCAGAAGGGAAGGCAATCAACTA
AAAATCCCTTTCTATTGGAGTTATTTTCATCATGTAAATTACTTAAGGCTTTTCTTGTTAGGGC
TTCTTGAATGCACATTTTGTCATTATCTGTATACCAAAGGTGAGCTTTTTTTTTAATCCATGTG
ATTTTATGAGTTGAAAGCTATAAGGTATTTTTTTAATTAAAAATTTCCTTCTAAATGGCAAA

hide sequence

RefSeq Acc Id:

XM_003832254 ⟹ XP_003832302

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,062,315 - 47,146,279 (+)	NCBI
NHGRI_mPanPan1	4	47,251,501 - 47,335,806 (+)	NCBI
Mhudiblu_PPA_v0	4	41,194,769 - 41,278,730 (+)	NCBI
PanPan1.1	4	47,046,277 - 47,131,091 (+)	NCBI

Sequence:

show sequence

AGGGGGAGGTTACTGGTGGTGGCGGCGGCGGCGGCGGCCCGGGCTCCGGCTGTCGGGGAAGCTG
CTGAGCTGTGATGGTGATGACGAGGTGAAAATGGCGGATCTTTCGAAATACAATCCCGGCCCCT
GACATACCAGAGGCGGCGGCGACGGCGACGTCGCCACCCCGGCTCCCTTCTCGGTCCCCGGGTA
CCCTGGAGCGCTCCAGTTTGGACAAACTGGGAAAGGAAGCTGCTGGCCAGAGCTATCGTGCACG
GGCAAAACAAGCCCCGCCGGGGCTCGGGATTGCCCAGGACCTTCTGGAGCCCCTACTTCGGAGC
CCGAGGGAGGAGAAAGCGGCAGCCGCTGGAGTGCCTGATCAACTTTCTAGCGGGAGAACGATCA
TGGAGGTGGTGCCAGCTGAGATTGCTAAGAAGCCTCGAACGCCAACCTCTGGTCCAGTAATCAC
GAAGCTGATCTTTGCAAAACCAATTAATAGTAAAGCAGTTACAGGACAGACAACTCAAGTTTCA
CCACCAGTCATTGCAGGTAGGGTTCTTTCACAGTCTACTCCCGGAACTCCATCAAAGACCATAA
CAATATCTGAAAGTGGTGTTATTGGATCAACTTTAAATTCTACAACACAGACACCAAATAAAAT
AGCCATCTCACCTTTGAAATCGCCAAATAAGGCAGTGAAATCAACTGTGCAGACCATCACTGTT
GGAGGAGTGAGCACATCACAGTTTAAGACAATTATTCCTCTGGCAACTGCTCCCAATGTCCAGC
AGATTCAAGTGCCTGGAAGCAAGTTTCATTATGTCCGACTTGTTACTGCCACATCAGCCAGTAG
CTCAACCCAGCCAGTTAGTCAGAATCCCAGTACAAACACTCAGCCTCTTCAGCAAGCAAAGCCA
GTGGTTGTTAATACAACCCCAGTGCGGATGTCAGTTCCAATTGTCTCAGCTCAGGCTGTCAAAC
AAGTTGTTCCAAAACCAATCAATCCAACTTCACAAATAGTAACTACTAGCCAGCCACAGCAACG
GCTTATCATGCCTGCCACACCACTGCCACAGATCCAGCCCAACCTCACTAACCTGCCACCAGGC
ACTGTCCTGGCACCAGCTCCGGGAACAGGGAATGTGGGTTATGCAGTGCTTCCAGCTCAGTATG
TTACTCAGCTACAGCAATCTTCATATGTATCAATAGCAAGCAACTCTACCTTTACTGGAACATC
TGGTATCCAGACCCAGGCACGGCTTCCATTCAATGGCATAATCCCATCAGAGTCGGCCAGTCGG
CCCCGAAAGCCCTGTAATTGTACAAAATCACTGTGTTTGAAATTGTATTGTGATTGCTTTGCAA
ATGGTGAATTTTGCAACAACTGCAATTGTACTAATTGTTACAACAATTTGGAACATGAAAATGA
AAGGCAAAAGGCAATAAAGGCATGCCTTGACAGAAATCCAGAAGCCTTTAAGCCTAAGATAGGG
AAAGGAAAGGAGGGAGAATCTGATCGACGTCATAGCAAAGGGTGTAATTGCAAACGATCAGGAT
GTCTTAAAAACTACTGTGAATGCTATGAGGCAAAAATAATGTGTTCCTCAATATGCAAATGTAT
TGGCTGTAAGAATTTTGAAGAAAGCCCGGAAAGGAAGACATTGATGCATTTGGCAGATGCAGCT
GAAGTAAGGGTACAGCAACAAACAGCAGCCAAGACGAAGTTATCCTCTCAAATTTCAGACTTGC
TTACTAGGCCAACACCAGCTTTAAATAGTGGAGGCGGAAAATTGCCATTTACATTTGTAACTAA
GGAAGTAGCTGAAGCCACATGTAATTGCCTCCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGA
AAATCAAAGGCAGCAGCGGAACGGATGATACTTGAGGAATTCGGACGATGTTTGATGAGTGTCA
TCAACTCTGCAGGAAAGGCAAAAAGTGACCCTTGTGCCATGAATTGCTAACTCTTGCACAAAAG
ACTGATAAATGGAACTGTACAGAAAATTTAAGGTGCAGGGACACTTGATTTTCTGGAAGAAAAA
CAATTACTGTATTTTAATTCAGTCCTTGTTTTAAAAGACCTGAAATTATAATACTGAAGGAGAA
GAAATTTTAAATGAGGAAATTAGTACATTTTAAATCTTAGTTAAATCTGCTTATGCCCCTTCTA
AATTGAATTTTTCTTTATTATATAGATTTTTTAATTTGCTTGGGTTTCTTAAGAATTAGATGTT
CTCTTTCTGATACCTTTGACAAAAAATGTTTATAAATTCATATAATTTATAATGTATGGTGTTG
TATGACTTTGTTAATAGAAAAGCCAAAGCAGCAGTGGTTAGCACCCATTCTTTGGGACTTGATC
TAGAATATCTGCAGACAGAATGTTACATAAACAAATTCTTATGAAACACATTCAAATGACATTT
TGTATTTAGAAAAGGACTATCTTTTAAAGAAAAAGCAGCCTTTTAGGGCAGATTCTGGAATAAT
ATCCTGTTGTCACTTTGGGAATGTCAGAAGGGGAAACAATCCCCAGGCACACTAAAAAGTTTTT
AAAGTTATTTAAAAAACATAAAATATTAAAGGACAGTAAATCTCAGAGGATGGGCAATGTGTTT
CTATAATAAGGAAAGGCTAACAGATGCTCTGGGCTGTCTCCATTTTCTTTCAAAGAGGTGGTAT
GTATTTGAAGTAATAAATTGTCAAAGTGATTACTGGGTACTATTAAAATGATAGGTGGATATAA
ATGGAAGTAAACATTATGTAGTGATAATATAGAACCTCACATAGTAATCAAGTTTAAAATTTGG
CATGGGTGGAGAAACAAAGAATAGGGAAGCTGCAAAAGATGAATTTAGAGAAGTTTTCATCTAT
ACAATCAATTATTTTTACAGACTTTTTTTTTTTGAGACGGAGTCTCGCTGTGTAGCCCAGGCTG
GAGTGCAATGGTGAGATCTCAGCTCACTGCAATGCCTCTGCCTCCCAGGTTCAAGCGATTCTCC
TGCCTCAGCCTCCCGTGTAGCTGGGACTACAGGTGCATGCCACCATGCCCAGCTCATTTTTTGT
ATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGA
TTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCGCCGTGCCCGGCCCTTT
TTATAGACTTTTGAACTAAGAGGTTTCAAACCAAATCGCAACTCTTACTTGATTTACAGAAATG
GGCCTCCTAACAAAATTTTCAAAATTGTGGTGGGATTTCTTTTTATAAGGGAAGTTTAATATGG
CATTATTTTCAGCCAGTGATTTGGAAGGTCTGTTTTCCTATAATTACTAAAATAACCTAAATCA
TTTTCAGTATTCAAAAACTCTATGAATTTAAGAGCCTGTTGTGACAGGACTCTTGATTTTATGA
CAAGAAAAAACCATGTTGGAATTCAGGCATTTTGTTAGGTACCTTAATCATCAGTAATTAGTAT
ATGATTATTTCATTTCCTACAAGGACTCTATAGTTGTATGTATTAAGTGTGTATATATGTTCAT
ATGAACACGCAAGATATAGGCAATAGAAATTAAGTAATCCAAAAGAGGATTCCGTTATTCACTA
AAGTATCTTCCTTTTAAATTTGGATTTATAAAATCATAGTGCAGTAACTTTAAATGTAGATAGT
TCAAACATTCTTAGCACCTCAATCCAGTATGTTTAATTAAAATTTGTATAAATGTAAATTAGTG
TAAGAGGGTAAAATAATAATCAAGTTATTTTTCAAAAGATTGCAATAAGTTTTTGGTCTAAACT
TAAACTTTGTTCATTTTGTACATACTCTGTGTTAATTCTAATTGCACCTTTGTGATGTGTATTT
ATATACAGTGTGCAGAAAATGTTCGTGAAATTTTGATTACAATTGTAGATTATGTATGATGGCA
TTGCTTACGAATGTTTTGCTTGTAAAAAAATTTCAAGGTGCAATCAAATGCTACTAGTTTTTCT
GATTTTCAAAAATCTATCTAAAATATTAAGCCTTTTCCTTCCTGTGTAGTACTTACTAAATAAC
TTTTTGTATTCAGGCATTTGCATCAAATTGCTGAACAAGATGAATAGCCACATTAATTCAATGA
TTTTAAAAGACTATTTGGGGAGGGTTGGGTATATAATTTTTTAGCTCTATTTACATCCCAAAGT
AGAAAGATTAAATTTATATTTACTAGAGCTATTCAAAGAATACACTTTTCTATATTGTAAAAAC
AGGACAGCAAAGCAAATCATACAGAAAATAAACATTTATACTATTCTGTAAAAAAAAGGTTTTG
CATTTTTTCTTTAGTATAATAACACCACTTTATTAACCATTTAATATGCAAAAAACCTTTTAAA
TTATCTGAAGTAAATTTGACATTACTTCTGAAAACACACAACTAAAAAATTCTATCATTTTGCT
CAGTTATTACTAACATAAATTGCTTTGAAATGAGAATATGTCTTCTCTTTTTTTCCCCACTGTT
TCTTTTAAGAGCAGAAACTCAGCCGGGCATGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGA
GGTCAAGGCGGGTGAATCACTTGAGTCCAGGAGTTCTAGACCAGCCCAGGCTACATGGTGAAAC
CCTGTCTCTACTAAAAATATAAAAAAATTAACTGCGTGTGGTGGCGCACACCTGCAGTCCTCGC
TACTTTGAAGGTTGAGGTGGGAGGATCGCCTGAGCCTGCAGAGGTTGAGGCTGTAGTGAGTCAA
AATTACACCACTGCACTCCAGCCTGGCAATCAGAGTGAGACCTTGTCTCAAAAACAAAATCAAA
AATACCTAGAAAATCAATCTACTCTGTCTTTTAATGTGAAATGTTCTTATGATAGCTATCTTTC
TTAGTTTCCTTTTTTCTGAAGCACTAAACACAACCTGTAGGTCTTATCTCTGGGGTCTGGGAAA
CAGAACCTTAATGTTACAGGTACAAAAGCAAACAGAGTGATTAGTTCCCCATTTTCTGGTAGTG
GACAACTGACATTTTTTCAATCTTATGTAAAATGTGAATAAAAATAATTTTAGAAAAGTTATCT
ATTTTTATTGTTCTGTAACACAAATAGTTAAGAAAATGAATACTTGTTATGTAAATGAAGCTTC
ACAGCAGGACCTCCGGCCATAACTTTGATCATGTTGTATCTCGTAAGCATTTTATATAGGAATT
CTGGTGTGGCTACCCAAAGCAGAAGGGAAGGCAATCAACTAAAAATCCCTTTCTATTGGAGTTA
TTTTCATCATGTAAATTACTTAAGGCTTTTCTTGTTAGGGCTTCTTGAATGCACATTTTGTCAT
TATCTGTATACCAAAGGTGAGCTTTTTTTTTAATCCATGTGATTTTATGAGTTGAAAGCTATAA
GGTATTTTTTTAATTAAAAATTTCCTTCTAAATGGCAAA

hide sequence

RefSeq Acc Id:

XM_034958552 ⟹ XP_034814443

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,060,208 - 47,146,279 (+)	NCBI
NHGRI_mPanPan1	4	47,249,393 - 47,335,806 (+)	NCBI
Mhudiblu_PPA_v0	4	41,192,653 - 41,276,629 (+)	NCBI

RefSeq Acc Id:

XM_034958554 ⟹ XP_034814445

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,060,208 - 47,146,279 (+)	NCBI
NHGRI_mPanPan1	4	47,249,394 - 47,335,806 (+)	NCBI
Mhudiblu_PPA_v0	4	41,192,654 - 41,278,730 (+)	NCBI

RefSeq Acc Id:

XM_055111360 ⟹ XP_054967335

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,060,886 - 47,146,279 (+)	NCBI
NHGRI_mPanPan1	4	47,250,070 - 47,335,806 (+)	NCBI

RefSeq Acc Id:

XM_055111362 ⟹ XP_054967337

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,060,927 - 47,146,279 (+)	NCBI
NHGRI_mPanPan1	4	47,250,111 - 47,335,806 (+)	NCBI

RefSeq Acc Id:

XM_063603774 ⟹ XP_063459844

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	47,062,312 - 47,146,279 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003832301	(Get FASTA)	NCBI Sequence Viewer
	XP_003832302	(Get FASTA)	NCBI Sequence Viewer
	XP_034814443	(Get FASTA)	NCBI Sequence Viewer
	XP_034814445	(Get FASTA)	NCBI Sequence Viewer
	XP_054967335	(Get FASTA)	NCBI Sequence Viewer
	XP_054967337	(Get FASTA)	NCBI Sequence Viewer
	XP_063459844	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000040295
	ENSPPAP00000040295.1
	ENSPPAP00000040298.1

RefSeq Acc Id:	XP_003832301 ⟸ XM_003832253
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CED1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETELEEIVNINSTGDSTATPISTE PITVYSNHTNQVAVNTTITKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKL GNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRP EVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAV TGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVK STVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATSASSSTQPVSQNPSTNT QPLQQAKPVVVNTTPVRMSVPIVSAQAVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQP NLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSTFTGTSGIQTQARLPFNGI IPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNP EAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKT LMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQ AEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMNC hide sequence

RefSeq Acc Id:

XP_003832302 ⟸ XM_003832254

- Peptide Label:

isoform X5

- Sequence:

show sequence

MEVVPAEIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTI
TISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSTVQTITVGGVSTSQFKTIIPLATAPNVQ
QIQVPGSKFHYVRLVTATSASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPIVSAQAVK
QVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQY
VTQLQQSSYVSIASNSTFTGTSGIQTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFA
NGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSG
CLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDL
LTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSV
INSAGKAKSDPCAMNC

hide sequence

RefSeq Acc Id:	XP_034814443 ⟸ XM_034958552
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CED1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034814445 ⟸ XM_034958554
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSPPAP00000040295 ⟸ ENSPPAT00000063210

Ensembl Acc Id:

ENSPPAP00000040298 ⟸ ENSPPAT00000063213

RefSeq Acc Id:	XP_054967335 ⟸ XM_055111360
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054967337 ⟸ XM_055111362
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063459844 ⟸ XM_063603774
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9CGZ4 (UniProtKB/TrEMBL)

Protein Domains

CRC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000042784	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000063210.1	UniProtKB/TrEMBL
	ENSPPAT00000063213.1	UniProtKB/TrEMBL
InterPro	CRC	UniProtKB/TrEMBL
	Lin-54_fam	UniProtKB/TrEMBL
	Tesmin/TSO1-like_CXC	UniProtKB/TrEMBL
KEGG Report	pps:100970077	UniProtKB/TrEMBL
NCBI Gene	LIN54	ENTREZGENE
PANTHER	PROTEIN LIN-54 HOMOLOG	UniProtKB/TrEMBL
	PTHR12446	UniProtKB/TrEMBL
Pfam	TCR	UniProtKB/TrEMBL
PROSITE	CRC	UniProtKB/TrEMBL
SMART	CXC	UniProtKB/TrEMBL
UniProt	A0A2R9CED1	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CGZ4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar