DEPDC7 (DEP domain containing 7) - Rat Genome Database

Name: DEPDC7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: DEPDC7 (DEP domain containing 7) Pan paniscus

Analyze

Symbol:

DEPDC7

Name:

DEP domain containing 7

RGD ID:

11722105

Description:

INVOLVED IN intracellular signal transduction (inferred); ASSOCIATED WITH autistic disorder (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DEP domain-containing protein 7

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	35,239,370 - 35,257,102 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	35,244,074 - 35,261,798 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	32,992,593 - 33,010,342 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	32,877,807 - 32,895,493 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	32,877,807 - 32,895,493 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular signal transduction (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

DEPDC7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	35,239,370 - 35,257,102 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	35,244,074 - 35,261,798 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	32,992,593 - 33,010,342 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	32,877,807 - 32,895,493 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	32,877,807 - 32,895,493 (+)	Ensembl	panpan1.1		panPan2

DEPDC7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	33,015,878 - 33,033,582 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	33,015,876 - 33,033,582 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	33,037,424 - 33,055,128 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	32,993,986 - 33,011,704 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	33,184,149 - 33,201,855 (+)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	32,732,122 - 32,749,828 (+)	NCBI		HuRef
CHM1_1	11	33,036,885 - 33,054,594 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	33,151,462 - 33,169,161 (+)	NCBI		T2T-CHM13v2.0

Depdc7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	104,552,129 - 104,573,202 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	104,552,129 - 104,573,223 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	104,721,784 - 104,742,857 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	104,721,784 - 104,742,878 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	104,561,941 - 104,582,958 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	104,522,623 - 104,543,640 (-)	NCBI		MGSCv36	mm8
Celera	2	105,957,706 - 105,980,467 (-)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.91	NCBI

Depdc7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,554,701 - 111,575,979 (-)	NCBI		GRCr8
mRatBN7.2	3	91,099,111 - 91,121,152 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	91,099,835 - 91,121,124 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	94,593,936 - 94,615,320 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	103,193,004 - 103,214,389 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	101,023,067 - 101,044,339 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	94,665,714 - 94,687,013 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,665,717 - 94,686,989 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	101,290,424 - 101,311,721 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	90,054,620 - 90,075,902 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	89,951,047 - 89,972,330 (-)	NCBI
Celera	3	90,159,018 - 90,180,296 (-)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

Depdc7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	13,165,138 - 13,189,693 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	13,167,191 - 13,189,080 (-)	NCBI	ChiLan1.0	ChiLan1.0

DEPDC7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	34,611,196 - 34,634,963 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	34,611,239 - 34,630,449 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	34,222,837 - 34,249,983 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	35,222,323 - 35,249,485 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	35,222,366 - 35,241,736 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	34,790,803 - 34,817,940 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	34,374,558 - 34,401,352 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	35,009,920 - 35,037,036 (-)	NCBI		UU_Cfam_GSD_1.0

Depdc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	31,760,447 - 31,782,608 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	4,886,185 - 4,907,370 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	4,886,185 - 4,907,351 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DEPDC7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	27,909,285 - 27,928,820 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	27,909,282 - 27,928,859 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	30,336,221 - 30,344,776 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DEPDC7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	32,182,032 - 32,199,997 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	32,182,000 - 32,199,627 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	129,343,624 - 129,361,471 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Depdc7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	14,180,258 - 14,205,511 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	14,185,332 - 14,204,632 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003830398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055094264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000056470 ⟹ ENSPPAP00000033594

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	32,877,807 - 32,895,493 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000056474 ⟹ ENSPPAP00000033598

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	32,878,112 - 32,895,493 (+)	Ensembl

RefSeq Acc Id:

XM_003830398 ⟹ XP_003830446

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	35,239,370 - 35,257,102 (+)	NCBI
NHGRI_mPanPan1	11	35,244,074 - 35,261,798 (+)	NCBI
Mhudiblu_PPA_v0	11	32,992,593 - 33,010,342 (+)	NCBI
PanPan1.1	11	32,877,807 - 32,895,493 (+)	NCBI

Sequence:

show sequence

CCACGCCCCGCACAGTTAACAGACGGGCGCTCAGGGAGTTAGGGAGCTGTGAAGCTGCTGGAGG
AGTTGGCGTCCGGGGAGCAAGGGCCATGGCCACCGTGCAGGAGAAGGCTGCTGCGCTGAACCTC
TCGGCTCTCCACAGCCCCGCGCACAGGCCTCCCGGTTTCAGTGTAGCTCAGAAGCCATTTGGAG
CCACGTATGTATGGAGCAGCATCATAAACACTCTTCAAACACAAGTGGAAGTGAAAAAACGAAG
GCACCGTTTAAAACGACATAATGACTGCTTTGTTGGTTCAGAAGCTGTGGATGTCATTTTTTCT
CACCTAATTCAGAATAAGTATTTTGGTGATGTAGATATTCCTCGAGCCAAAGTGGTGAGAGTGT
GTCAAGCGCTTATGGACTACAAAGTATTTGAAGCAGTTCCAACCAAAGTCTTTGGAAAAGACAA
AAAACCTACATTTGAAGATAGTAGTTGCAGCCTTTATAGATTTACCACAATACCTAACCAAGAC
AGTCAGTTAGGCAAAGAGAACAAACTATATTCACCTGCCAGGTATGCAGATGCATTATTTAAGT
CATCCGATATCAGATCAGCCAGTTTAGAGGACCTGTGGGAAAATCTGAGTTTAAAGCCTGCCAA
CTCCCCTCACGTAAATATCTCTGCAACCTTGTCTCCACAAGTTATTAATGAAGTGTGGCAAGAA
GAAACAATTGGGCGTCTACTACAACTTGTAGACCTTCCACTTCTTGACTCCTTACTGAAACAGC
AAGAGGCTGTACCTAAAATTCCTCAACCTAAGAGGCAGTCCACCATGGTCAACAGCAGTAACTA
TCTGGATCGAGGGATTCTCAAGGCTTATAGTGACTCTCAGGAAGATGAGTGGCTCTCTGCAGCA
ATTGACTGTTTAGAATACCTTCCAGACCAAATGGTGGTGGAAATAAGCAGAAGCTTTCCTGAGC
AACCAGACCGAACAGACTTAGTGAAAGAACTTCTGTTTGATGCCATTGGCAGATATTACAGTAG
TAGGGAACCTCTGTTAAATCACTTATCTGACGTTCATAATGGAATTGCAGAACTCTTAGTGAAT
GGGAAGACGGAAATAGCTTTAGAAGCTACCCAGCTCCTTCTAAAGCTTTTAGATTTCCAAAATA
GAGAAGAATTTAGAAGACTACTGTATTTCATGGCTGTTGCAGCAAATCCTTCTGAGTTTAAATT
ACAGAAAGAAAGTGACAACCGAATGGTTGTGAAAAGGATATTCTCAAAAGCTATTGTTGACAAT
AAAAATTTATCCAAAGGCAAAACAGATCTTCTGGTACTCTTTTTAATGGATCATCAGAAAGATG
TTTTTAAGATTCCTGGAACTCTACATAAAATTGTAAGTGTTAAGCTTATGGCCATACAGAACGG
AAGAGATCCAAATAGAGATGCAGGATATATTTATTGCCAGAGAATTGATCAACATGACTATTCC
AACAATACAGAGAAGACAACCAAAGATGAGCTGTTGAATTTACTAAAAACTCTTGATGAGGATT
CAAAACTTTCTGCCAAAGAGAAGAAAAAGTTGCTAGGTCAATTCTATAAGTGTCACCCAGACAT
CTTTATTGAGCATTTTGGAGACTGAGTTTTTAATATCTGTATATAAGTTGTGTATTTTAAGAAT
AAATTATGTATCCTAAATATCCAATCACATTTGTAAGCATGGAAGCTCTAAATTTGAAACTGTA
CTTAATAAAAATTTTTTGTATAA

hide sequence

RefSeq Acc Id:

XM_055094264 ⟹ XP_054950239

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	35,239,604 - 35,257,102 (+)	NCBI
NHGRI_mPanPan1	11	35,244,311 - 35,261,798 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003830446	(Get FASTA)	NCBI Sequence Viewer
	XP_054950239	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000033594
	ENSPPAP00000033594.1
	ENSPPAP00000033598.1

RefSeq Acc Id:	XP_003830446 ⟸ XM_003830398
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9C4Z2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATVQEKAAALNLSALHSPAHRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHND CFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSS CSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISA TLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKA YSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHL SDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRM VVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAG YIYCQRIDQHDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDIFIEHFGD hide sequence

RefSeq Acc Id:

ENSPPAP00000033598 ⟸ ENSPPAT00000056474

RefSeq Acc Id:

ENSPPAP00000033594 ⟸ ENSPPAT00000056470

RefSeq Acc Id:	XP_054950239 ⟸ XM_055094264
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BV88 (UniProtKB/TrEMBL)

Protein Domains

DEP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000039670	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000056470.1	UniProtKB/TrEMBL
	ENSPPAT00000056474.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	DEP_dom	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	pps:100971893	UniProtKB/TrEMBL
NCBI Gene	DEPDC7	ENTREZGENE
PANTHER	DEP DOMAIN-CONTAINING	UniProtKB/TrEMBL
	DEP DOMAIN-CONTAINING PROTEIN 7	UniProtKB/TrEMBL
Pfam	DEP	UniProtKB/TrEMBL
PROSITE	DEP	UniProtKB/TrEMBL
SMART	DEP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A2R9BV88	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9C4Z2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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