PCED1B (PC-esterase domain containing 1B)

Gene: PCED1B (PC-esterase domain containing 1B) Pan paniscus

Analyze

Symbol:

PCED1B

Name:

PC-esterase domain containing 1B

RGD ID:

11721421

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

PC-esterase domain-containing protein 1B

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	46,930,899 - 47,087,757 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	46,926,849 - 47,084,391 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	41,496,557 - 41,653,299 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	42,369,326 - 42,371,238 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	42,369,622 - 42,370,920 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

PCED1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	46,930,899 - 47,087,757 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	46,926,849 - 47,084,391 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	41,496,557 - 41,653,299 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	42,369,326 - 42,371,238 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	42,369,622 - 42,370,920 (-)	Ensembl	panpan1.1		panPan2

PCED1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	47,079,621 - 47,236,660 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	47,079,603 - 47,236,662 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	47,473,404 - 47,630,443 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	45,896,319 - 45,916,710 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	46,407,103 - 46,427,485 (+)	NCBI		Celera
Cytogenetic Map	12	q13.11	NCBI
HuRef	12	44,504,308 - 44,661,267 (+)	NCBI		HuRef
CHM1_1	12	47,438,770 - 47,596,027 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	47,040,396 - 47,197,436 (+)	NCBI		T2T-CHM13v2.0

Pced1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	97,143,563 - 97,283,574 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	97,144,988 - 97,283,561 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	97,246,973 - 97,385,693 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	97,247,107 - 97,385,680 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	97,077,538 - 97,216,124 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	97,075,141 - 97,213,710 (+)	NCBI		MGSCv36	mm8
Celera	15	99,413,319 - 99,523,000 (+)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	52.91	NCBI

Pced1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	130,273,531 - 130,451,727 (+)	NCBI		GRCr8
mRatBN7.2	7	128,394,388 - 128,528,231 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	128,391,319 - 128,528,231 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	130,191,814 - 130,325,394 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	132,417,346 - 132,550,921 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	132,361,405 - 132,463,291 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	138,707,426 - 138,846,127 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	138,707,426 - 138,846,123 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	138,445,301 - 138,468,401 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	136,003,629 - 136,105,935 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	124,915,764 - 125,017,288 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Pced1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	6,278,897 - 6,280,228 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	6,247,689 - 6,280,542 (+)	NCBI	ChiLan1.0	ChiLan1.0

PCED1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	7,352,609 - 7,380,663 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	38,928,297 - 38,943,326 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	7,420,426 - 7,448,744 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	7,433,663 - 7,574,336 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	7,368,670 - 7,377,427 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	7,397,821 - 7,425,926 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	39,171,283 - 39,186,314 (+)	NCBI		UU_Cfam_GSD_1.0

Pced1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	67,849,712 - 67,913,670 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936512	5,291,516 - 5,315,118 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100626390
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	115,351,244 - 115,355,466 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	127,459,310 - 127,461,020 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCED1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	43,284,788 - 43,529,721 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	43,436,921 - 43,438,219 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	202,920,442 - 203,104,971 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pced1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624816	4,926,441 - 5,184,520 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008951101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034935978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034935979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034935980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034935981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034935982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055095721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055095725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063593075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010108826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010108827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000029670 ⟹ ENSPPAP00000007372

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	42,369,622 - 42,370,920 (-)	Ensembl

RefSeq Acc Id:

XM_008951101 ⟹ XP_008949349

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,930,899 - 47,087,633 (-)	NCBI
NHGRI_mPanPan1	12	46,926,849 - 47,084,391 (-)	NCBI
Mhudiblu_PPA_v0	12	41,496,557 - 41,653,299 (-)	NCBI
PanPan1.1	12	42,369,326 - 42,371,238 (-)	NCBI

Sequence:

show sequence

GCAGCCTCAGGTCATTCAGAGGTCAAGCCCCAGGCCTGAACTGCCACTAGACAAAGAAGGCTTT
TGGCTCCCTTCCTGCCCTCTCGCCAATCTCCCAGGTCCGGGCTTGGTGGAGCCTGTTATGCGGG
CACTCCAGGTCCACTCCCTCAGGCCAGAGGCCACAGCGCTATCCCCTTCCCCATGGTCTCCCTA
CCCCCAACCTGCACTGGGCGCTCCGCCCAGAGGTGAGTCCCTCCCAGCCGTTCTCTCCTTCTGT
CCTAGCCGTCCGCAGAGCCATCCCGTGCAAAGGAAGGAGATAGGCTGTGCGCCCTGGGCGTCAT
GATCCTTCTGCGGGCCTCCGAAGTGCGGCAGCTGCTTCACAATAAGTTCGTGGTCATCCTGGGG
GACTCTGTGCATAGGGCAGTATACAAGGACCTGGTGCTTCTGCTGCAGAAGGACCGCCTGCTCA
CTCCCGGGCAGCTTAGAGCAAGGGGGGAGCTGAACTTCGAACAAGATGAGCTGGTGGACGGAGG
CCAGCGGGGCCACATGCACAACGGCCTTAACTACCGTGAGGTCCGCGAGTTCCGCTCCGACCAC
CATCTGGTGCGTTTTTACTTCCTCACCCGCGTGTACTCCGATTACCTCCAGACCATCTTGAAAG
AGCTGCAGTCGGGCGAGCACGCCCCCGACCTGGTCATCATGAATTCCTGCCTCTGGGACATCTC
CAGGTATGGTCCGAACTCCTGGAGAAGCTACCTGGAGAACCTGGAGAACCTGTTCCAGTGCCTG
GGCCAGGTGCTGCCCGAGTCTTGCCTCCTGGTGTGGAACACGGCCATGCCTGTGGGCGAGGAAG
TCACCGGGGGTTTTCTTCCGCCCAAGCTCCGGCGGCAGAAGGCCACCTTCCTGAAAAACGAAGT
GGTCAAAGCCAACTTCCACAGCGCCACCGAGGCACGTAAACATAACTTCGATGTACTGGACTTG
CATTTCCACTTCCGCCACGCGAGGGAGAACCTGCACTGGGACGGGGTGCACTGGAATGGACGAG
TGCACCGCTGCCTCTCCCAGCTGCTGCTGGCCCACGTGGCCGACGCCTGGGGTGTGGAGCTGCC
CCACCGCCACCCCGTGGGCGAGTGGATCAAGAAGAAAAAACCTGGCCCGAGAGTCGAAGGGCCG
CCCCAGGCCAACAGAAATCACCCGGCCTTACCTCTGTCTCCACCCTTACCTTCCCCCACATACC
GCCCCCTGCTTGGGTTCCCACCCCAGCGCTTGCCGCTGCTCCCGCTCCTGTCCCCACAGCCTCC
TCCTCCCATTCTCCATCACCAGGGAGTGCCCCGGTTCCCACAGGGTCCCCCAGATGCCTGTTTT
TCCTCAGACCATACTTTCCAGTCGGATCAATTCTATTGCCATTCAGATGTCCCCTCATCAGCCC
ATGCAGGTTTCTTCTTTGAAGACAACTTTATGGTTGGTCCTCAGCTGCCTATGCCCTTCTTCCC
CACACCCCGTTATCAGCGGCCTGCCCCAGTGGTACATAGGGGTTTTGGTAGGTATCGTCCCCGT
GGCCCCTATGCGCCCTGGGGACAGCGGCCTCGACCTTCAAAGAGAAGGGCCCCAGCCAATCCTG
AGCCAAGGCCTCAATAGACGGACCTAGGCCTTATTTTTATGAACATGGATTGGACAGATCTGAC
ACTTCCTTTCCATTGCTTGGCCTGAACAGACTGACCTTGTTAACTTAAGCCTGGAGTCCATGCC
TCGTCTTCCTTTTGTTCATTGCTGTTACCAAGAAAGCCAAGGAAGAGCAGCCTGACTCATTCTT
CTTGGCTGCAGCCTCTTCCCCACTTCCTGGGAGTGACCCAGCATTATTCCTGCCTCCTCACTCC
TATTCTCTTTGCCTTTGTGTAAAAATAAAATGGAAATAAACAAGTTGCACAGAAGTA

hide sequence

RefSeq Acc Id:

XM_055095721 ⟹ XP_054951696

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,930,899 - 46,950,866 (-)	NCBI
NHGRI_mPanPan1	12	46,926,849 - 46,947,624 (-)	NCBI

RefSeq Acc Id:

XM_055095725 ⟹ XP_054951700

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,930,899 - 47,087,621 (-)	NCBI
NHGRI_mPanPan1	12	46,926,849 - 47,084,379 (-)	NCBI

RefSeq Acc Id:

XM_063593072 ⟹ XP_063449142

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,930,899 - 47,087,757 (-)	NCBI

RefSeq Acc Id:

XM_063593073 ⟹ XP_063449143

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,930,899 - 47,087,730 (-)	NCBI

RefSeq Acc Id:

XM_063593074 ⟹ XP_063449144

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,930,899 - 47,087,730 (-)	NCBI

RefSeq Acc Id:

XM_063593075 ⟹ XP_063449145

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,930,899 - 46,950,855 (-)	NCBI

RefSeq Acc Id:

XR_010108826

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,990,657 - 47,087,757 (-)	NCBI

RefSeq Acc Id:

XR_010108827

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	46,990,657 - 47,087,735 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008949349	(Get FASTA)	NCBI Sequence Viewer
	XP_054951696	(Get FASTA)	NCBI Sequence Viewer
	XP_054951700	(Get FASTA)	NCBI Sequence Viewer
	XP_063449142	(Get FASTA)	NCBI Sequence Viewer
	XP_063449143	(Get FASTA)	NCBI Sequence Viewer
	XP_063449144	(Get FASTA)	NCBI Sequence Viewer
	XP_063449145	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000007372.1

RefSeq Acc Id:	XP_008949349 ⟸ XM_008951101
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZQY0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MILLRASEVRQLLHNKFVVILGDSVHRAVYKDLVLLLQKDRLLTPGQLRARGELNFEQDELVDG GQRGHMHNGLNYREVREFRSDHHLVRFYFLTRVYSDYLQTILKELQSGEHAPDLVIMNSCLWDI SRYGPNSWRSYLENLENLFQCLGQVLPESCLLVWNTAMPVGEEVTGGFLPPKLRRQKATFLKNE VVKANFHSATEARKHNFDVLDLHFHFRHARENLHWDGVHWNGRVHRCLSQLLLAHVADAWGVEL PHRHPVGEWIKKKKPGPRVEGPPQANRNHPALPLSPPLPSPTYRPLLGFPPQRLPLLPLLSPQP PPPILHHQGVPRFPQGPPDACFSSDHTFQSDQFYCHSDVPSSAHAGFFFEDNFMVGPQLPMPFF PTPRYQRPAPVVHRGFGRYRPRGPYAPWGQRPRPSKRRAPANPEPRPQ hide sequence

RefSeq Acc Id:

ENSPPAP00000007372 ⟸ ENSPPAT00000029670

RefSeq Acc Id:	XP_054951700 ⟸ XM_055095725
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_054951696 ⟸ XM_055095721
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063449142 ⟸ XM_063593072
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063449144 ⟸ XM_063593074
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063449143 ⟸ XM_063593073
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063449145 ⟸ XM_063593075
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000026608	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000029670.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1110	UniProtKB/TrEMBL
InterPro	SGNH_hydro_sf	UniProtKB/TrEMBL
KEGG Report	pps:100977400	UniProtKB/TrEMBL
NCBI Gene	PCED1B	ENTREZGENE
PANTHER	PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1B	UniProtKB/TrEMBL
	SARCOMA ANTIGEN NY-SAR-23	UniProtKB/TrEMBL
Superfamily-SCOP	SGNH hydrolase	UniProtKB/TrEMBL
UniProt	A0A2R8ZQY0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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