DDO (D-aspartate oxidase) - Rat Genome Database

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Gene: DDO (D-aspartate oxidase) Pan paniscus
Analyze
Symbol: DDO
Name: D-aspartate oxidase
RGD ID: 11719479
Description: ENCODES a protein that exhibits D-aspartate oxidase activity (ortholog); FAD binding (ortholog); INVOLVED IN aspartate catabolic process (ortholog); aspartate metabolic process (ortholog); D-amino acid catabolic process (ortholog); PARTICIPATES IN Canavan disease pathway; ASSOCIATED WITH Ataxia (ortholog); sexual dysfunction (ortholog); Weight Gain (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16112,269,271 - 112,292,980 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6112,269,271 - 112,292,980 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06108,199,861 - 108,223,844 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
DDO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16112,269,271 - 112,292,980 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6112,269,271 - 112,292,980 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06108,199,861 - 108,223,844 (-)NCBIMhudiblu_PPA_v0panPan3
DDO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6110,391,771 - 110,415,575 (-)EnsemblGRCh38hg38GRCh38
GRCh386110,388,321 - 110,415,575 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376110,709,524 - 110,736,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366110,820,076 - 110,843,446 (-)NCBINCBI36hg18NCBI36
Build 346110,820,076 - 110,843,446NCBI
Celera6111,460,002 - 111,483,375 (-)NCBI
Cytogenetic Map6q21NCBI
HuRef6108,280,297 - 108,303,682 (-)NCBIHuRef
CHM1_16110,976,574 - 110,999,941 (-)NCBICHM1_1
Ddo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391040,505,933 - 40,557,847 (+)NCBIGRCm39mm39
GRCm39 Ensembl1040,506,007 - 40,557,843 (+)Ensembl
GRCm381040,630,011 - 40,681,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1040,630,011 - 40,681,847 (+)EnsemblGRCm38mm10GRCm38
MGSCv371040,349,817 - 40,369,737 (+)NCBIGRCm37mm9NCBIm37
MGSCv361040,319,451 - 40,338,387 (+)NCBImm8
Celera1041,519,749 - 41,540,710 (+)NCBICelera
Cytogenetic Map10B1NCBI
Ddo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22044,090,823 - 44,109,962 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2044,090,914 - 44,133,095 (+)Ensembl
Rnor_6.02048,739,812 - 48,758,958 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,739,639 - 48,758,905 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02050,384,344 - 50,403,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42044,766,925 - 44,786,836 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2044,899,117 - 44,918,244 (+)NCBICelera
Cytogenetic Map20q13NCBI
Ddo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541135,143,735 - 35,163,276 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541135,142,415 - 35,163,234 (-)NCBIChiLan1.0ChiLan1.0
DDO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11267,080,646 - 67,104,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1267,081,329 - 67,104,397 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1267,081,329 - 67,104,397 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1266,885,507 - 66,924,087 (-)NCBI
ROS_Cfam_1.01267,950,181 - 67,988,830 (-)NCBI
UMICH_Zoey_3.11267,316,440 - 67,340,123 (-)NCBI
UNSW_CanFamBas_1.01267,163,368 - 67,186,153 (-)NCBI
UU_Cfam_GSD_1.01267,419,791 - 67,458,386 (-)NCBI
Ddo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946102,005,153 - 102,025,014 (-)NCBI
SpeTri2.0NW_0049365646,280,890 - 6,299,838 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl176,390,493 - 76,417,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1176,391,112 - 76,417,147 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2185,867,147 - 85,892,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DDO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11363,484,726 - 63,510,181 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604035,777,187 - 35,805,285 (+)NCBIVero_WHO_p1.0
Ddo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249161,488,912 - 1,522,175 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000047679   ⟹   ENSPPAP00000024853
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6112,269,271 - 112,292,980 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000047682   ⟹   ENSPPAP00000024856
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6112,269,271 - 112,292,974 (-)Ensembl
RefSeq Acc Id: XM_003806036   ⟹   XP_003806084
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.16112,269,271 - 112,292,974 (-)NCBI
Mhudiblu_PPA_v06108,200,503 - 108,223,844 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003806037   ⟹   XP_003806085
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.16112,269,271 - 112,292,980 (-)NCBI
Mhudiblu_PPA_v06108,199,861 - 108,223,844 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034962700   ⟹   XP_034818591
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06108,199,861 - 108,223,844 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003806084 (Get FASTA)   NCBI Sequence Viewer  
  XP_003806085 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818591 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003806085   ⟸   XM_003806037
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003806084   ⟸   XM_003806036
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034818591   ⟸   XM_034962700
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000024853   ⟸   ENSPPAT00000047679
RefSeq Acc Id: ENSPPAP00000024856   ⟸   ENSPPAT00000047682


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035567 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000024853 ENTREZGENE
  ENSPPAP00000024856 ENTREZGENE
NCBI Gene DDO ENTREZGENE