LOC100979023 (ubiquinol-cytochrome c reductase complex assembly factor 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC100979023 (ubiquinol-cytochrome c reductase complex assembly factor 6) Pan paniscus
Analyze
Symbol: LOC100979023 (Ensembl: UQCC6)
Name: ubiquinol-cytochrome c reductase complex assembly factor 6
RGD ID: 11719365
Description: INVOLVED IN mitochondrial cytochrome c oxidase assembly (inferred); mitochondrial respiratory chain complex III assembly (inferred); FOUND IN mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C12H12orf73; chromosome 12 C12orf73 homolog; chromosome 12 open reading frame, human C12orf73; ubiquinol-cytochrome-c reductase complex assembly factor 6; uncharacterized protein C12orf73 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,013,843 - 112,022,240 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,007,312 - 112,026,590 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012101,528,767 - 101,543,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112104,923,288 - 104,930,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12104,923,288 - 104,930,357 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100979023
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,013,843 - 112,022,240 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,007,312 - 112,026,590 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012101,528,767 - 101,543,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112104,923,288 - 104,930,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12104,923,288 - 104,930,357 (-)Ensemblpanpan1.1panPan2
UQCC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812103,950,194 - 103,965,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12103,940,763 - 103,965,708 (-)EnsemblGRCh38hg38GRCh38
GRCh3712104,343,972 - 104,350,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612102,868,647 - 102,874,911 (-)NCBINCBI36Build 36hg18NCBI36
Celera12104,007,750 - 104,014,765 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12101,403,716 - 101,410,729 (-)NCBIHuRef
CHM1_112104,309,937 - 104,316,939 (-)NCBICHM1_1
T2T-CHM13v2.012103,911,904 - 103,927,498 (-)NCBIT2T-CHM13v2.0
Uqcc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,455,685 - 82,459,062 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,455,685 - 82,459,062 (-)EnsemblGRCm39 Ensembl
GRCm381082,619,851 - 82,623,228 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,619,851 - 82,623,228 (-)EnsemblGRCm38mm10GRCm38
MGSCv371082,082,596 - 82,085,973 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,049,654 - 82,053,021 (-)NCBIMGSCv36mm8
Celera1084,602,945 - 84,606,257 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Uqcc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,992,573 - 22,995,666 (+)NCBIGRCr8
mRatBN7.2721,104,729 - 21,108,135 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl721,105,042 - 21,108,135 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx723,079,837 - 23,082,930 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0725,242,546 - 25,245,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0725,019,621 - 25,022,714 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0727,221,184 - 27,224,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,221,152 - 27,224,274 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,340,344 - 27,343,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,327,597 - 23,330,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera718,284,860 - 18,287,946 (+)NCBICelera
Cytogenetic Map7q13NCBI
CUNH12orf73
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,651,787 - 38,656,564 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,651,787 - 38,656,564 (-)NCBIChiLan1.0ChiLan1.0
UQCC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11542,478,762 - 42,485,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1542,479,354 - 42,485,795 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1542,848,250 - 42,855,325 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01543,136,351 - 43,143,458 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1543,136,943 - 43,143,416 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11542,402,471 - 42,409,567 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01542,501,201 - 42,508,303 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01542,772,401 - 42,779,672 (-)NCBIUU_Cfam_GSD_1.0
CUNH12orf73
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494517,495,361 - 17,502,059 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649210,506,152 - 10,512,103 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649210,505,313 - 10,512,107 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl580,504,281 - 80,510,867 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1580,504,240 - 80,519,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH12orf73
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,142,963 - 99,167,933 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,143,719 - 99,149,228 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037145,837,086 - 145,857,689 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH12orf73
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,729,531 - 4,734,399 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,729,549 - 4,734,399 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000060848   ⟹   ENSPPAP00000037946
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12104,923,288 - 104,930,357 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000060856   ⟹   ENSPPAP00000037954
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12104,926,548 - 104,929,823 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000060861   ⟹   ENSPPAP00000037959
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12104,928,002 - 104,929,823 (-)Ensembl
RefSeq Acc Id: XM_063593611   ⟹   XP_063449681
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v210112,013,843 - 112,022,231 (-)NCBI
RefSeq Acc Id: XM_063593612   ⟹   XP_063449682
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v210112,013,843 - 112,022,240 (-)NCBI
RefSeq Acc Id: XR_010108953
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v210112,013,843 - 112,022,229 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063449681 (Get FASTA)   NCBI Sequence Viewer  
  XP_063449682 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037946.1
  ENSPPAP00000037954.1
  ENSPPAP00000037959.1
Ensembl Acc Id: ENSPPAP00000037946   ⟸   ENSPPAT00000060848
Ensembl Acc Id: ENSPPAP00000037954   ⟸   ENSPPAT00000060856
Ensembl Acc Id: ENSPPAP00000037959   ⟸   ENSPPAT00000060861
RefSeq Acc Id: XP_063449682   ⟸   XM_063593612
- UniProtKB: A0A2R9C7Q6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449681   ⟸   XM_063593611
- UniProtKB: A0A2R9C7Q6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041703 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060848.1 UniProtKB/TrEMBL
  ENSPPAT00000060856.1 UniProtKB/TrEMBL
  ENSPPAT00000060861.1 UniProtKB/TrEMBL
InterPro BRAWNIN UniProtKB/TrEMBL
KEGG Report pps:100979023 UniProtKB/TrEMBL
NCBI Gene C12H12orf73 ENTREZGENE
PANTHER PROTEIN BRAWNIN UniProtKB/TrEMBL
  PTHR28492 UniProtKB/TrEMBL
Pfam DUF4516 UniProtKB/TrEMBL
UniProt A0A2R9C7Q6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C812_PANPA UniProtKB/TrEMBL
  A0A2R9C817_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100979023  ubiquinol-cytochrome c reductase complex assembly factor 6  LOC100979023  LINE-1 retrotransposable element ORF2 protein  Symbol and/or name change 5135510 APPROVED
2023-06-21 LOC100979023  LINE-1 retrotransposable element ORF2 protein  LOC100979023  ubiquinol-cytochrome-c reductase complex assembly factor 6  Symbol and/or name change 5135510 APPROVED
2023-04-25 LOC100979023  ubiquinol-cytochrome-c reductase complex assembly factor 6  C12H12orf73  chromosome 12 C12orf73 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C12H12orf73  chromosome 12 C12orf73 homolog    chromosome 12 open reading frame, human C12orf73  Symbol and/or name change 5135510 APPROVED