SLC10A2 (solute carrier family 10 member 2) - Rat Genome Database

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Gene: SLC10A2 (solute carrier family 10 member 2) Pan paniscus
Analyze
Symbol: SLC10A2
Name: solute carrier family 10 member 2
RGD ID: 11719126
Description: ENCODES a protein that exhibits bile acid:sodium symporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); response to bacterium (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); cognitive disorder (ortholog); Diabetes Complications (ortholog); FOUND IN apical plasma membrane (ortholog); microvillus (ortholog); proteasome complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ileal sodium/bile acid cotransporter; solute carrier family 10 (sodium/bile acid cotransporter family), member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214104,557,172 - 104,579,612 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113103,226,769 - 103,249,184 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01384,200,209 - 84,224,164 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113103,336,510 - 103,359,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13103,336,073 - 103,359,359 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC10A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214104,557,172 - 104,579,612 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113103,226,769 - 103,249,184 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01384,200,209 - 84,224,164 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113103,336,510 - 103,359,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13103,336,073 - 103,359,359 (-)Ensemblpanpan1.1panPan2
SLC10A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813103,043,998 - 103,066,417 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13103,043,998 - 103,066,417 (-)EnsemblGRCh38hg38GRCh38
GRCh3713103,696,348 - 103,718,767 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613102,494,351 - 102,517,197 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413102,494,350 - 102,517,197NCBI
Celera1384,540,839 - 84,563,679 (-)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1384,288,627 - 84,311,468 (-)NCBIHuRef
CHM1_113103,665,790 - 103,688,632 (-)NCBICHM1_1
T2T-CHM13v2.013102,262,214 - 102,284,623 (-)NCBIT2T-CHM13v2.0
Slc10a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3985,133,219 - 5,155,287 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl85,133,219 - 5,155,351 (-)EnsemblGRCm39 Ensembl
GRCm3885,083,219 - 5,105,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl85,083,219 - 5,105,351 (-)EnsemblGRCm38mm10GRCm38
MGSCv3785,085,623 - 5,105,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3685,085,595 - 5,105,204 (-)NCBIMGSCv36mm8
Celera85,284,430 - 5,304,029 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map82.16NCBI
Slc10a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81691,088,089 - 91,111,025 (+)NCBIGRCr8
mRatBN7.21684,386,528 - 84,409,475 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1684,374,862 - 84,409,475 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1689,642,557 - 89,665,103 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01693,095,100 - 93,117,661 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01688,368,950 - 88,391,491 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01690,324,420 - 90,350,254 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1690,324,361 - 90,345,865 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01689,709,462 - 89,732,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41689,939,295 - 89,961,444 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11689,925,334 - 90,169,172 (+)NCBI
Celera1682,094,445 - 82,108,935 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Slc10a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554048,122,119 - 8,137,236 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554048,122,119 - 8,137,236 (+)NCBIChiLan1.0ChiLan1.0
SLC10A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12252,523,679 - 52,541,976 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2252,523,568 - 52,541,976 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2252,303,382 - 52,321,688 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02252,971,496 - 52,989,910 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2252,971,385 - 52,989,910 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12252,623,655 - 52,642,062 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02252,641,492 - 52,659,869 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02252,682,501 - 52,700,845 (-)NCBIUU_Cfam_GSD_1.0
Slc10a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,883,292 - 187,899,366 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364728,052,789 - 8,068,863 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364728,052,789 - 8,069,085 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC10A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1171,327,017 - 71,348,757 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11171,328,801 - 71,348,779 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,617,382 - 78,629,178 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC10A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1381,608,394 - 81,630,170 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl381,607,276 - 81,629,719 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604638,148,726 - 38,170,077 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc10a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247938,452,727 - 8,468,661 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247938,452,536 - 8,468,835 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003832066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000025319   ⟹   ENSPPAP00000005594
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl13103,336,073 - 103,359,359 (-)Ensembl
RefSeq Acc Id: XM_003832066   ⟹   XP_003832114
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v214104,557,172 - 104,579,612 (-)NCBI
NHGRI_mPanPan113103,226,769 - 103,249,184 (-)NCBI
Mhudiblu_PPA_v01384,200,209 - 84,224,164 (-)NCBI
PanPan1.113103,336,510 - 103,359,359 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003832114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005594
  ENSPPAP00000005594.1
Reference Protein Sequences
RefSeq Acc Id: XP_003832114   ⟸   XM_003832066
- UniProtKB: A0A2R8ZLX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000005594   ⟸   ENSPPAT00000025319


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000023060 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000025319.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1530.20 UniProtKB/TrEMBL
InterPro BilAc:Na_symport/Acr3 UniProtKB/TrEMBL
  Bilac:Na_transpt UniProtKB/TrEMBL
  Na+/solute_symporter_sf UniProtKB/TrEMBL
KEGG Report pps:100967660 UniProtKB/TrEMBL
NCBI Gene SLC10A2 ENTREZGENE
PANTHER PTHR10361 UniProtKB/TrEMBL
  PTHR10361:SF19 UniProtKB/TrEMBL
Pfam SBF UniProtKB/TrEMBL
UniProt A0A2R8ZLX7 ENTREZGENE, UniProtKB/TrEMBL