CDK16 (cyclin dependent kinase 16) - Rat Genome Database

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Gene: CDK16 (cyclin dependent kinase 16) Pan paniscus
Analyze
Symbol: CDK16
Name: cyclin dependent kinase 16
RGD ID: 11718818
Description: ENCODES a protein that exhibits ATP binding (inferred); cyclin-dependent protein serine/threonine kinase activity (inferred); protein kinase activity (inferred); INVOLVED IN neuron projection development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN cyclin-dependent protein kinase holoenzyme complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-dependent kinase 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X48,845,255 - 48,857,411 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X48,848,631 - 48,860,778 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X39,655,119 - 39,666,878 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X47,512,540 - 47,524,742 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX47,512,647 - 47,524,742 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDK16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X48,845,255 - 48,857,411 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X48,848,631 - 48,860,778 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X39,655,119 - 39,666,878 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X47,512,540 - 47,524,742 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX47,512,647 - 47,524,742 (+)Ensemblpanpan1.1panPan2
CDK16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,218,303 - 47,229,997 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX47,217,860 - 47,229,997 (+)EnsemblGRCh38hg38GRCh38
GRCh37X47,077,702 - 47,089,396 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X46,962,576 - 46,974,340 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X46,834,368 - 46,845,646NCBI
CeleraX51,272,820 - 51,284,689 (+)NCBICelera
Cytogenetic MapXp11.3NCBI
HuRefX44,787,880 - 44,799,166 (+)NCBIHuRef
CHM1_1X47,109,023 - 47,120,894 (+)NCBICHM1_1
T2T-CHM13v2.0X46,627,994 - 46,639,688 (+)NCBIT2T-CHM13v2.0
Cdk16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,554,210 - 20,566,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX20,554,193 - 20,566,119 (+)EnsemblGRCm39 Ensembl
GRCm38X20,687,917 - 20,699,880 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,687,954 - 20,699,880 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X20,265,619 - 20,277,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X19,845,452 - 19,856,836 (+)NCBIMGSCv36mm8
CeleraX18,818,515 - 18,829,822 (+)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX16.18NCBI
Cdk16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X4,046,330 - 4,057,825 (-)NCBIGRCr8
mRatBN7.2X1,492,814 - 1,504,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX1,492,814 - 1,504,148 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX1,526,769 - 1,538,316 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X5,002,471 - 5,014,018 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X1,317,829 - 1,329,324 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X1,707,285 - 1,718,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,707,289 - 1,718,637 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X2,500,716 - 2,512,252 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X12,910,972 - 12,916,939 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X12,915,537 - 12,927,071 (-)NCBI
CeleraX2,056,946 - 2,068,298 (-)NCBICelera
Cytogenetic MapXq11NCBI
Cdk16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955516860,480 - 873,338 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955516860,474 - 873,338 (-)NCBIChiLan1.0ChiLan1.0
CDK16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X40,810,107 - 40,822,130 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX40,810,500 - 40,842,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,185,265 - 15,197,292 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X40,944,129 - 40,956,156 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX40,944,527 - 40,976,724 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X40,931,813 - 40,943,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X40,919,670 - 40,931,696 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,012,774 - 41,024,801 (+)NCBIUU_Cfam_GSD_1.0
Cdk16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X33,147,088 - 33,159,436 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650212,987,731 - 13,000,186 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650212,987,736 - 13,000,186 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX41,835,987 - 41,848,574 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X41,836,268 - 41,848,580 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X46,765,046 - 46,776,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDK16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X44,405,672 - 44,416,478 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX44,410,598 - 44,416,818 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660769,663,924 - 9,675,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdk16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248873,986,217 - 3,999,000 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248873,986,218 - 3,998,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000040544   ⟹   ENSPPAP00000017826
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX47,512,647 - 47,524,742 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040559   ⟹   ENSPPAP00000017840
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX47,517,738 - 47,523,513 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000040564   ⟹   ENSPPAP00000017845
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX47,517,762 - 47,524,742 (+)Ensembl
RefSeq Acc Id: XM_003809668   ⟹   XP_003809716
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,845,255 - 48,856,403 (+)NCBI
NHGRI_mPanPan1X48,848,631 - 48,859,779 (+)NCBI
Mhudiblu_PPA_v0X39,655,120 - 39,665,870 (+)NCBI
PanPan1.1X47,512,647 - 47,524,742 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008961940   ⟹   XP_008960188
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,845,471 - 48,857,411 (+)NCBI
NHGRI_mPanPan1X48,848,955 - 48,860,778 (+)NCBI
Mhudiblu_PPA_v0X39,655,119 - 39,666,878 (+)NCBI
PanPan1.1X47,512,647 - 47,524,742 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034950665   ⟹   XP_034806556
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,845,455 - 48,857,411 (+)NCBI
NHGRI_mPanPan1X48,849,030 - 48,860,778 (+)NCBI
Mhudiblu_PPA_v0X39,655,586 - 39,666,878 (+)NCBI
RefSeq Acc Id: XM_034950666   ⟹   XP_034806557
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,845,455 - 48,856,403 (+)NCBI
NHGRI_mPanPan1X48,849,033 - 48,859,779 (+)NCBI
Mhudiblu_PPA_v0X39,655,568 - 39,665,870 (+)NCBI
RefSeq Acc Id: XM_055106855   ⟹   XP_054962830
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,845,459 - 48,857,411 (+)NCBI
NHGRI_mPanPan1X48,848,835 - 48,860,778 (+)NCBI
RefSeq Acc Id: XM_055106856   ⟹   XP_054962831
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,850,424 - 48,856,403 (+)NCBI
NHGRI_mPanPan1X48,853,800 - 48,859,779 (+)NCBI
RefSeq Acc Id: XM_055106857   ⟹   XP_054962832
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,845,606 - 48,857,411 (+)NCBI
NHGRI_mPanPan1X48,848,982 - 48,860,777 (+)NCBI
RefSeq Acc Id: XM_055106858   ⟹   XP_054962833
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X48,845,258 - 48,856,403 (+)NCBI
NHGRI_mPanPan1X48,848,634 - 48,859,779 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003809716   ⟸   XM_003809668
- Peptide Label: isoform X7
- UniProtKB: A0A2R9AQ22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008960188   ⟸   XM_008961940
- Peptide Label: isoform X6
- UniProtKB: A0A2R9AQ22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034806557   ⟸   XM_034950666
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034806556   ⟸   XM_034950665
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000017840   ⟸   ENSPPAT00000040559
RefSeq Acc Id: ENSPPAP00000017845   ⟸   ENSPPAT00000040564
RefSeq Acc Id: ENSPPAP00000017826   ⟸   ENSPPAT00000040544
RefSeq Acc Id: XP_054962833   ⟸   XM_055106858
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054962830   ⟸   XM_055106855
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054962832   ⟸   XM_055106857
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054962831   ⟸   XM_055106856
- Peptide Label: isoform X3
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031958 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040544.1 UniProtKB/TrEMBL
  ENSPPAT00000040559.1 UniProtKB/TrEMBL
  ENSPPAT00000040564.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene CDK16 ENTREZGENE
PANTHER CELL DIVISION PROTEIN KINASE UniProtKB/TrEMBL
  CYCLIN-DEPENDENT KINASE 16 UniProtKB/TrEMBL
Pfam Haspin_kinase UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A2R9AKD5_PANPA UniProtKB/TrEMBL
  A0A2R9AQ22 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AQ26_PANPA UniProtKB/TrEMBL